miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6982 3' -53.9 NC_001875.2 + 88853 1.11 0.002698
Target:  5'- gGCCCAGCCCAACAUCAAGACGCACACc -3'
miRNA:   3'- -CGGGUCGGGUUGUAGUUCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 86718 0.83 0.186134
Target:  5'- cGCCCGGCCgAcacugcucgucgcACAUgAAGGCGCGCACg -3'
miRNA:   3'- -CGGGUCGGgU-------------UGUAgUUCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 38202 0.8 0.272239
Target:  5'- cCCCAGCaCGACGUgCAGGACGUGCACg -3'
miRNA:   3'- cGGGUCGgGUUGUA-GUUCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 122035 0.79 0.285785
Target:  5'- gGUCCGGCCCAACGUUAcuGUGCACGCg -3'
miRNA:   3'- -CGGGUCGGGUUGUAGUucUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 31255 0.79 0.299856
Target:  5'- cGCCCGGCCCGcguacGCGUC--GACGCAgACg -3'
miRNA:   3'- -CGGGUCGGGU-----UGUAGuuCUGCGUgUG- -5'
6982 3' -53.9 NC_001875.2 + 45761 0.78 0.353285
Target:  5'- cGCCgAGCCCGACAccgaggucgUCAAG-CGCGCAa -3'
miRNA:   3'- -CGGgUCGGGUUGU---------AGUUCuGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 42649 0.77 0.384128
Target:  5'- cGCCCAGCCgGuccGCGUCGAGgcugauuugcgccaGCGUGCACg -3'
miRNA:   3'- -CGGGUCGGgU---UGUAGUUC--------------UGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 16758 0.76 0.449969
Target:  5'- --aCAGCCCGGCGUCGuGACuGCGCGCc -3'
miRNA:   3'- cggGUCGGGUUGUAGUuCUG-CGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 79781 0.76 0.458512
Target:  5'- uGCCCAGCCCcACuuugacguuccaGUCGGugucgcggucguuGACGCGCACg -3'
miRNA:   3'- -CGGGUCGGGuUG------------UAGUU-------------CUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 42565 0.76 0.459467
Target:  5'- cGCCCAGCC--GCGcCAGGucgGCGCACGCg -3'
miRNA:   3'- -CGGGUCGGguUGUaGUUC---UGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 112169 0.75 0.498471
Target:  5'- uGUCCaAGCCCAGCAUUuuGACGCAa-- -3'
miRNA:   3'- -CGGG-UCGGGUUGUAGuuCUGCGUgug -5'
6982 3' -53.9 NC_001875.2 + 3800 0.75 0.512472
Target:  5'- gGCCCGaCUCAGCGUCGAccaccggccgucgucGGCGCACGCc -3'
miRNA:   3'- -CGGGUcGGGUUGUAGUU---------------CUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 107831 0.74 0.518522
Target:  5'- aGCCCGcGCCCGguGCGccUUgcGACGCGCGCg -3'
miRNA:   3'- -CGGGU-CGGGU--UGU--AGuuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 48028 0.74 0.538885
Target:  5'- gGCCCAcguggccgccGCCCAcagGCAcgAGGGCGCGCGCu -3'
miRNA:   3'- -CGGGU----------CGGGU---UGUagUUCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 64931 0.74 0.545048
Target:  5'- uGCCCGuGCCCAGCAUUAugcaaaacacgauGGCGC-CGCg -3'
miRNA:   3'- -CGGGU-CGGGUUGUAGUu------------CUGCGuGUG- -5'
6982 3' -53.9 NC_001875.2 + 81491 0.74 0.559514
Target:  5'- cGCgCGGCCCGACGcCAAcGACGCcgACACc -3'
miRNA:   3'- -CGgGUCGGGUUGUaGUU-CUGCG--UGUG- -5'
6982 3' -53.9 NC_001875.2 + 110527 0.74 0.559514
Target:  5'- gGCCCcGCgCAAUuugaggugGUCAAGACGCACGa -3'
miRNA:   3'- -CGGGuCGgGUUG--------UAGUUCUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 89250 0.74 0.569912
Target:  5'- uGCCCAGCgCCgAGCu----GACGCGCGCg -3'
miRNA:   3'- -CGGGUCG-GG-UUGuaguuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 129013 0.74 0.569912
Target:  5'- cGCCCAGCuacucgCCAACGUCGccGCGCuCGCg -3'
miRNA:   3'- -CGGGUCG------GGUUGUAGUucUGCGuGUG- -5'
6982 3' -53.9 NC_001875.2 + 95415 0.73 0.580357
Target:  5'- aGCaCCAGCCCGACAcCGcGGCGCcggccagcguGCGCg -3'
miRNA:   3'- -CG-GGUCGGGUUGUaGUuCUGCG----------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.