Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6982 | 3' | -53.9 | NC_001875.2 | + | 38597 | 0.7 | 0.766874 |
Target: 5'- gGgCCAGCUgcGCGUCGAGGaGCGCACc -3' miRNA: 3'- -CgGGUCGGguUGUAGUUCUgCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 110527 | 0.74 | 0.559514 |
Target: 5'- gGCCCcGCgCAAUuugaggugGUCAAGACGCACGa -3' miRNA: 3'- -CGGGuCGgGUUG--------UAGUUCUGCGUGUg -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 129013 | 0.74 | 0.569912 |
Target: 5'- cGCCCAGCuacucgCCAACGUCGccGCGCuCGCg -3' miRNA: 3'- -CGGGUCG------GGUUGUAGUucUGCGuGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 20626 | 0.73 | 0.611898 |
Target: 5'- uGCCCAcGCCCGugAgCAAcaaaaaacGGCGCGCGCc -3' miRNA: 3'- -CGGGU-CGGGUugUaGUU--------CUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 67446 | 0.72 | 0.63302 |
Target: 5'- aGCCCAGCaaCAGCGUCugaaagcuGACGCGCcgGCa -3' miRNA: 3'- -CGGGUCGg-GUUGUAGuu------CUGCGUG--UG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 83310 | 0.72 | 0.665726 |
Target: 5'- gGCCCAGCaCCGGCGUCuuaaacgcggucuuGACGUggugccGCACg -3' miRNA: 3'- -CGGGUCG-GGUUGUAGuu------------CUGCG------UGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 37666 | 0.71 | 0.696074 |
Target: 5'- cGCCUgauAGCCaaCGACggCGAuGACGCGCACa -3' miRNA: 3'- -CGGG---UCGG--GUUGuaGUU-CUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 46279 | 0.71 | 0.725942 |
Target: 5'- cGCCCAGCCCGuuGUgaUGAGGCGCccgucuaGCAUg -3' miRNA: 3'- -CGGGUCGGGUugUA--GUUCUGCG-------UGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 32100 | 0.71 | 0.726961 |
Target: 5'- cGUCaCAGCaCgAGCAcgaCAAGGCGCGCACu -3' miRNA: 3'- -CGG-GUCG-GgUUGUa--GUUCUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 64931 | 0.74 | 0.545048 |
Target: 5'- uGCCCGuGCCCAGCAUUAugcaaaacacgauGGCGC-CGCg -3' miRNA: 3'- -CGGGU-CGGGUUGUAGUu------------CUGCGuGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 48028 | 0.74 | 0.538885 |
Target: 5'- gGCCCAcguggccgccGCCCAcagGCAcgAGGGCGCGCGCu -3' miRNA: 3'- -CGGGU----------CGGGU---UGUagUUCUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 107831 | 0.74 | 0.518522 |
Target: 5'- aGCCCGcGCCCGguGCGccUUgcGACGCGCGCg -3' miRNA: 3'- -CGGGU-CGGGU--UGU--AGuuCUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 86718 | 0.83 | 0.186134 |
Target: 5'- cGCCCGGCCgAcacugcucgucgcACAUgAAGGCGCGCACg -3' miRNA: 3'- -CGGGUCGGgU-------------UGUAgUUCUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 38202 | 0.8 | 0.272239 |
Target: 5'- cCCCAGCaCGACGUgCAGGACGUGCACg -3' miRNA: 3'- cGGGUCGgGUUGUA-GUUCUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 122035 | 0.79 | 0.285785 |
Target: 5'- gGUCCGGCCCAACGUUAcuGUGCACGCg -3' miRNA: 3'- -CGGGUCGGGUUGUAGUucUGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 45761 | 0.78 | 0.353285 |
Target: 5'- cGCCgAGCCCGACAccgaggucgUCAAG-CGCGCAa -3' miRNA: 3'- -CGGgUCGGGUUGU---------AGUUCuGCGUGUg -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 42649 | 0.77 | 0.384128 |
Target: 5'- cGCCCAGCCgGuccGCGUCGAGgcugauuugcgccaGCGUGCACg -3' miRNA: 3'- -CGGGUCGGgU---UGUAGUUC--------------UGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 42565 | 0.76 | 0.459467 |
Target: 5'- cGCCCAGCC--GCGcCAGGucgGCGCACGCg -3' miRNA: 3'- -CGGGUCGGguUGUaGUUC---UGCGUGUG- -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 112169 | 0.75 | 0.498471 |
Target: 5'- uGUCCaAGCCCAGCAUUuuGACGCAa-- -3' miRNA: 3'- -CGGG-UCGGGUUGUAGuuCUGCGUgug -5' |
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6982 | 3' | -53.9 | NC_001875.2 | + | 3800 | 0.75 | 0.512472 |
Target: 5'- gGCCCGaCUCAGCGUCGAccaccggccgucgucGGCGCACGCc -3' miRNA: 3'- -CGGGUcGGGUUGUAGUU---------------CUGCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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