miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6982 3' -53.9 NC_001875.2 + 1244 0.7 0.776559
Target:  5'- cGCCCGGCgCAAUuuaaacaguGUUuuGGCGCGCAUu -3'
miRNA:   3'- -CGGGUCGgGUUG---------UAGuuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 2268 0.66 0.930168
Target:  5'- cGCUgCGGgCCAuguugACGUCGuGAUGCGCGCg -3'
miRNA:   3'- -CGG-GUCgGGU-----UGUAGUuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 3800 0.75 0.512472
Target:  5'- gGCCCGaCUCAGCGUCGAccaccggccgucgucGGCGCACGCc -3'
miRNA:   3'- -CGGGUcGGGUUGUAGUU---------------CUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 4581 0.67 0.90678
Target:  5'- aGCCgCAuGCCCGACAU----GCGCACGa -3'
miRNA:   3'- -CGG-GU-CGGGUUGUAguucUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 5298 0.66 0.940337
Target:  5'- uGCCCGcGCCCGACGaccacUCcau-UGCGCGCu -3'
miRNA:   3'- -CGGGU-CGGGUUGU-----AGuucuGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 5533 0.66 0.924703
Target:  5'- -gCCGGCCgc-CGUUGAGGCGCGCGu -3'
miRNA:   3'- cgGGUCGGguuGUAGUUCUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 6920 0.66 0.930168
Target:  5'- cGCUCGGCCgAggGCGU--GGAcCGCGCGCu -3'
miRNA:   3'- -CGGGUCGGgU--UGUAguUCU-GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 7349 0.68 0.871957
Target:  5'- uGCCCGGCCaAACcaucauguguAUCGAGcCGUACAg -3'
miRNA:   3'- -CGGGUCGGgUUG----------UAGUUCuGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 8495 0.67 0.913007
Target:  5'- cGCCgGGCgCCGucCGUguGGGCGcCGCGCa -3'
miRNA:   3'- -CGGgUCG-GGUu-GUAguUCUGC-GUGUG- -5'
6982 3' -53.9 NC_001875.2 + 8834 0.66 0.930168
Target:  5'- cGCCCAaCaCCAACucauUCAGcuGGCGCACGu -3'
miRNA:   3'- -CGGGUcG-GGUUGu---AGUU--CUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 9142 0.69 0.822721
Target:  5'- cGCgCCAGUUCggUGUCcacGGCGCACGCc -3'
miRNA:   3'- -CG-GGUCGGGuuGUAGuu-CUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 11014 0.66 0.924142
Target:  5'- uGCCCAuggugugccuGCCCAugAugggcgaccaguuUCAccACGCGCGCa -3'
miRNA:   3'- -CGGGU----------CGGGUugU-------------AGUucUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 12839 0.66 0.935379
Target:  5'- gGCCacgUAGUCgGGCAUCu-GGCGCGCAa -3'
miRNA:   3'- -CGG---GUCGGgUUGUAGuuCUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 14979 0.67 0.893578
Target:  5'- cGCCCAacacGCCCGACuguuUCGAGuuuGCGUGCu- -3'
miRNA:   3'- -CGGGU----CGGGUUGu---AGUUC---UGCGUGug -5'
6982 3' -53.9 NC_001875.2 + 15051 0.68 0.871957
Target:  5'- cGCaCCAGguguacCCCGGCAUCAAcucauUGCACGCg -3'
miRNA:   3'- -CG-GGUC------GGGUUGUAGUUcu---GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 15922 0.66 0.945041
Target:  5'- gGCaCCGGCaacaugacCCAGCuggCGGGGCGCcaGCACu -3'
miRNA:   3'- -CG-GGUCG--------GGUUGua-GUUCUGCG--UGUG- -5'
6982 3' -53.9 NC_001875.2 + 16758 0.76 0.449969
Target:  5'- --aCAGCCCGGCGUCGuGACuGCGCGCc -3'
miRNA:   3'- cggGUCGGGUUGUAGUuCUG-CGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 17742 0.66 0.940337
Target:  5'- uGUCCAGCCaAACGcCGuuuGCGUACACg -3'
miRNA:   3'- -CGGGUCGGgUUGUaGUuc-UGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 17797 0.66 0.940337
Target:  5'- cGCgCAGCCCGcgugcuacCAUCuGGAC-CGCGCg -3'
miRNA:   3'- -CGgGUCGGGUu-------GUAGuUCUGcGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 19861 0.66 0.940337
Target:  5'- aCUCGGCC--GCGUCGcGGCGCGgGCg -3'
miRNA:   3'- cGGGUCGGguUGUAGUuCUGCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.