miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 3' -56.2 NC_001875.2 + 95209 1.09 0.001904
Target:  5'- cGACACCGGCGUAGCCAUGUUGCGCUCu -3'
miRNA:   3'- -CUGUGGCCGCAUCGGUACAACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 41816 0.77 0.269992
Target:  5'- cGCGCCGGCGccgcGGCCA-GUUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa---UCGGUaCAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 99392 0.77 0.290119
Target:  5'- cGCACCGGCGgcGCCAgcggGUcGCGCa- -3'
miRNA:   3'- cUGUGGCCGCauCGGUa---CAaCGCGag -5'
6985 3' -56.2 NC_001875.2 + 31924 0.76 0.318757
Target:  5'- uGCACCGcGCGcgGGCCcgcucGUUGCGCUCg -3'
miRNA:   3'- cUGUGGC-CGCa-UCGGua---CAACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 61603 0.73 0.444254
Target:  5'- gGGCGCCGGCGgcgcuucgGGCUGUGUcggcgGCGcCUCg -3'
miRNA:   3'- -CUGUGGCCGCa-------UCGGUACAa----CGC-GAG- -5'
6985 3' -56.2 NC_001875.2 + 51581 0.73 0.444254
Target:  5'- cGACGCgCGGCGUGGCCAcGUuuaacagcuUGUGCg- -3'
miRNA:   3'- -CUGUG-GCCGCAUCGGUaCA---------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 55734 0.72 0.52151
Target:  5'- --gGCCGaGCGUGGCCAUGcgGCcCUCu -3'
miRNA:   3'- cugUGGC-CGCAUCGGUACaaCGcGAG- -5'
6985 3' -56.2 NC_001875.2 + 48538 0.72 0.541665
Target:  5'- aGACGCCGGUGcugGGCCAcgUGUgcGUGCUUc -3'
miRNA:   3'- -CUGUGGCCGCa--UCGGU--ACAa-CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 84450 0.71 0.562073
Target:  5'- cGGCGgCGGCgGUAGaCCAUGaUGCGCg- -3'
miRNA:   3'- -CUGUgGCCG-CAUC-GGUACaACGCGag -5'
6985 3' -56.2 NC_001875.2 + 2665 0.71 0.572356
Target:  5'- cGGCGCCGGCGgcGCCuggggcaacUGcgGCGcCUCg -3'
miRNA:   3'- -CUGUGGCCGCauCGGu--------ACaaCGC-GAG- -5'
6985 3' -56.2 NC_001875.2 + 29280 0.7 0.603441
Target:  5'- cGCGCCGGCGgggcgcGGUCGUGUggcgugucgUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa-----UCGGUACA---------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 20769 0.7 0.603441
Target:  5'- cGGCGCCGGCGUcguccacguagaAGCCGUcGacGCGCa- -3'
miRNA:   3'- -CUGUGGCCGCA------------UCGGUA-CaaCGCGag -5'
6985 3' -56.2 NC_001875.2 + 43481 0.7 0.613857
Target:  5'- cGCGCCGGCGUuuu--UGUUcGCGCUCg -3'
miRNA:   3'- cUGUGGCCGCAucgguACAA-CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 12973 0.7 0.634724
Target:  5'- cGACACgGGCGU-GCCcgGUuugauguacaUGCGCg- -3'
miRNA:   3'- -CUGUGgCCGCAuCGGuaCA----------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 11611 0.7 0.634724
Target:  5'- -gUugCGGCGUGGCCAcgaauggguUGgcGCGCaUCg -3'
miRNA:   3'- cuGugGCCGCAUCGGU---------ACaaCGCG-AG- -5'
6985 3' -56.2 NC_001875.2 + 98910 0.69 0.665986
Target:  5'- uGGCGCCGuagcucGCGgcGCCG-GUUGCGCg- -3'
miRNA:   3'- -CUGUGGC------CGCauCGGUaCAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 95425 0.69 0.676362
Target:  5'- cGACACCgcGGCGccGGCCAgcgUGCGCg- -3'
miRNA:   3'- -CUGUGG--CCGCa-UCGGUacaACGCGag -5'
6985 3' -56.2 NC_001875.2 + 82198 0.69 0.676362
Target:  5'- gGGCGCCGGCGgccGCuCGUGUcGcCGCUg -3'
miRNA:   3'- -CUGUGGCCGCau-CG-GUACAaC-GCGAg -5'
6985 3' -56.2 NC_001875.2 + 108935 0.69 0.680502
Target:  5'- aGACA-CGGCGUugcgcagcaggaugcGGCCGUGUgcgauagcgaUGCGCUg -3'
miRNA:   3'- -CUGUgGCCGCA---------------UCGGUACA----------ACGCGAg -5'
6985 3' -56.2 NC_001875.2 + 88432 0.69 0.6867
Target:  5'- uACGCCGGCGUuaacgAGCgCAUGgaaaagauugUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCA-----UCG-GUACa---------ACGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.