miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 3' -56.2 NC_001875.2 + 25353 0.66 0.847401
Target:  5'- uACACCGGCGagcuguuuuucaaAGCCGUcaacGUuggcccggcgccgauUGCGCUCa -3'
miRNA:   3'- cUGUGGCCGCa------------UCGGUA----CA---------------ACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 63742 0.68 0.737494
Target:  5'- -uCGCCGGCGUcGCuCAUGUUaaaUGCUCu -3'
miRNA:   3'- cuGUGGCCGCAuCG-GUACAAc--GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 3549 0.67 0.77647
Target:  5'- -uCACCGGC---GCCGUGgcGCGuCUCa -3'
miRNA:   3'- cuGUGGCCGcauCGGUACaaCGC-GAG- -5'
6985 3' -56.2 NC_001875.2 + 100606 0.67 0.77647
Target:  5'- gGGCGCCGGcCGcGGCCGcUGuUUGC-CUCg -3'
miRNA:   3'- -CUGUGGCC-GCaUCGGU-AC-AACGcGAG- -5'
6985 3' -56.2 NC_001875.2 + 31687 0.67 0.804327
Target:  5'- --uGCCGGCGUGGaCCGccgcUUGCGCg- -3'
miRNA:   3'- cugUGGCCGCAUC-GGUac--AACGCGag -5'
6985 3' -56.2 NC_001875.2 + 131180 0.67 0.813301
Target:  5'- cGCAccCCGGCGUGuuuGCaguuUAUGUUGgCGCUCa -3'
miRNA:   3'- cUGU--GGCCGCAU---CG----GUACAAC-GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 78876 0.67 0.821231
Target:  5'- --aGCUGGCGUGGUUaaaguugGUGUaGCGCUUg -3'
miRNA:   3'- cugUGGCCGCAUCGG-------UACAaCGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 103212 0.66 0.830727
Target:  5'- cGACACgGGCacgcugacGCCGgccUUGCGCUCa -3'
miRNA:   3'- -CUGUGgCCGcau-----CGGUac-AACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 37093 0.66 0.839161
Target:  5'- cGACACCGccGCGUGGgUGUGcggGCGCg- -3'
miRNA:   3'- -CUGUGGC--CGCAUCgGUACaa-CGCGag -5'
6985 3' -56.2 NC_001875.2 + 44484 0.68 0.737494
Target:  5'- uGCACCGGCGcgaccaGGCCGaacUGUUGCaaCUCu -3'
miRNA:   3'- cUGUGGCCGCa-----UCGGU---ACAACGc-GAG- -5'
6985 3' -56.2 NC_001875.2 + 119047 0.68 0.737494
Target:  5'- aGACugguCCGGCGU-GCgCAUG-UGCGCg- -3'
miRNA:   3'- -CUGu---GGCCGCAuCG-GUACaACGCGag -5'
6985 3' -56.2 NC_001875.2 + 110907 0.68 0.736497
Target:  5'- -cCGCgGGCGUuugagcuGGCCAUGgcGCGCcCa -3'
miRNA:   3'- cuGUGgCCGCA-------UCGGUACaaCGCGaG- -5'
6985 3' -56.2 NC_001875.2 + 41816 0.77 0.269992
Target:  5'- cGCGCCGGCGccgcGGCCA-GUUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa---UCGGUaCAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 99392 0.77 0.290119
Target:  5'- cGCACCGGCGgcGCCAgcggGUcGCGCa- -3'
miRNA:   3'- cUGUGGCCGCauCGGUa---CAaCGCGag -5'
6985 3' -56.2 NC_001875.2 + 31924 0.76 0.318757
Target:  5'- uGCACCGcGCGcgGGCCcgcucGUUGCGCUCg -3'
miRNA:   3'- cUGUGGC-CGCa-UCGGua---CAACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 55734 0.72 0.52151
Target:  5'- --gGCCGaGCGUGGCCAUGcgGCcCUCu -3'
miRNA:   3'- cugUGGC-CGCAUCGGUACaaCGcGAG- -5'
6985 3' -56.2 NC_001875.2 + 84450 0.71 0.562073
Target:  5'- cGGCGgCGGCgGUAGaCCAUGaUGCGCg- -3'
miRNA:   3'- -CUGUgGCCG-CAUC-GGUACaACGCGag -5'
6985 3' -56.2 NC_001875.2 + 29280 0.7 0.603441
Target:  5'- cGCGCCGGCGgggcgcGGUCGUGUggcgugucgUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa-----UCGGUACA---------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 88432 0.69 0.6867
Target:  5'- uACGCCGGCGUuaacgAGCgCAUGgaaaagauugUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCA-----UCG-GUACa---------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 69441 0.69 0.711302
Target:  5'- uGACGCCGGCGUuugcgcgccGGCCAcgcuaaacaacgUGCGCg- -3'
miRNA:   3'- -CUGUGGCCGCA---------UCGGUaca---------ACGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.