miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 3' -56.2 NC_001875.2 + 454 0.66 0.855437
Target:  5'- uGCACCGGCGa----GUGUUcGCGCUUg -3'
miRNA:   3'- cUGUGGCCGCaucggUACAA-CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 2665 0.71 0.572356
Target:  5'- cGGCGCCGGCGgcGCCuggggcaacUGcgGCGcCUCg -3'
miRNA:   3'- -CUGUGGCCGCauCGGu--------ACaaCGC-GAG- -5'
6985 3' -56.2 NC_001875.2 + 3549 0.67 0.77647
Target:  5'- -uCACCGGC---GCCGUGgcGCGuCUCa -3'
miRNA:   3'- cuGUGGCCGcauCGGUACaaCGC-GAG- -5'
6985 3' -56.2 NC_001875.2 + 4865 0.68 0.766904
Target:  5'- gGGCAuCCGuuGUGGUUAUGacacgUGCGCUCg -3'
miRNA:   3'- -CUGU-GGCcgCAUCGGUACa----ACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 7377 0.66 0.870872
Target:  5'- -cCGCCGGaucGGCCAcgcgGUUGCGCg- -3'
miRNA:   3'- cuGUGGCCgcaUCGGUa---CAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 7447 0.66 0.847401
Target:  5'- cGCGCCGGCGauugcGGCgGUGUacggccgauucUGCGC-Ca -3'
miRNA:   3'- cUGUGGCCGCa----UCGgUACA-----------ACGCGaG- -5'
6985 3' -56.2 NC_001875.2 + 11611 0.7 0.634724
Target:  5'- -gUugCGGCGUGGCCAcgaauggguUGgcGCGCaUCg -3'
miRNA:   3'- cuGugGCCGCAUCGGU---------ACaaCGCG-AG- -5'
6985 3' -56.2 NC_001875.2 + 12973 0.7 0.634724
Target:  5'- cGACACgGGCGU-GCCcgGUuugauguacaUGCGCg- -3'
miRNA:   3'- -CUGUGgCCGCAuCGGuaCA----------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 20769 0.7 0.603441
Target:  5'- cGGCGCCGGCGUcguccacguagaAGCCGUcGacGCGCa- -3'
miRNA:   3'- -CUGUGGCCGCA------------UCGGUA-CaaCGCGag -5'
6985 3' -56.2 NC_001875.2 + 23584 0.67 0.785903
Target:  5'- gGGCACCGcGUGcuUGGCCAgcagcccGUUgacGCGCUCg -3'
miRNA:   3'- -CUGUGGC-CGC--AUCGGUa------CAA---CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 25353 0.66 0.847401
Target:  5'- uACACCGGCGagcuguuuuucaaAGCCGUcaacGUuggcccggcgccgauUGCGCUCa -3'
miRNA:   3'- cUGUGGCCGCa------------UCGGUA----CA---------------ACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 29280 0.7 0.603441
Target:  5'- cGCGCCGGCGgggcgcGGUCGUGUggcgugucgUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa-----UCGGUACA---------ACGCGag -5'
6985 3' -56.2 NC_001875.2 + 31041 0.67 0.804327
Target:  5'- cGAC-CCGGCGcGGCCGUacGUcggacaacugUGcCGCUCa -3'
miRNA:   3'- -CUGuGGCCGCaUCGGUA--CA----------AC-GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 31687 0.67 0.804327
Target:  5'- --uGCCGGCGUGGaCCGccgcUUGCGCg- -3'
miRNA:   3'- cugUGGCCGCAUC-GGUac--AACGCGag -5'
6985 3' -56.2 NC_001875.2 + 31924 0.76 0.318757
Target:  5'- uGCACCGcGCGcgGGCCcgcucGUUGCGCUCg -3'
miRNA:   3'- cUGUGGC-CGCa-UCGGua---CAACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 37093 0.66 0.839161
Target:  5'- cGACACCGccGCGUGGgUGUGcggGCGCg- -3'
miRNA:   3'- -CUGUGGC--CGCAUCgGUACaa-CGCGag -5'
6985 3' -56.2 NC_001875.2 + 40222 0.67 0.804327
Target:  5'- uGGCGCCGGCGaaacGCgCGUGUUuagcGUGCUg -3'
miRNA:   3'- -CUGUGGCCGCau--CG-GUACAA----CGCGAg -5'
6985 3' -56.2 NC_001875.2 + 41024 0.67 0.813301
Target:  5'- -uCGCCaaccGCGUGGCCGUGgacgGCGUUUu -3'
miRNA:   3'- cuGUGGc---CGCAUCGGUACaa--CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 41816 0.77 0.269992
Target:  5'- cGCGCCGGCGccgcGGCCA-GUUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCa---UCGGUaCAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 43481 0.7 0.613857
Target:  5'- cGCGCCGGCGUuuu--UGUUcGCGCUCg -3'
miRNA:   3'- cUGUGGCCGCAucgguACAA-CGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.