miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 3' -56.5 NC_001875.2 + 107563 0.66 0.840583
Target:  5'- gACAA-GCgCGGCGCCGUCGcacaAGCUu-- -3'
miRNA:   3'- -UGUUaCGgGUCGCGGCAGU----UCGAccu -5'
6987 3' -56.5 NC_001875.2 + 62584 0.66 0.840583
Target:  5'- uGCAuuaaccgGCCC-GUGCCGUCGGGCa--- -3'
miRNA:   3'- -UGUua-----CGGGuCGCGGCAGUUCGaccu -5'
6987 3' -56.5 NC_001875.2 + 72733 0.66 0.832187
Target:  5'- cGCGucGgCCAGCgacGCCGUCAGcCUGGAa -3'
miRNA:   3'- -UGUuaCgGGUCG---CGGCAGUUcGACCU- -5'
6987 3' -56.5 NC_001875.2 + 108974 0.66 0.832187
Target:  5'- aGCGAUGCgCuGCaGCaCGgugucCAGGCUGGAc -3'
miRNA:   3'- -UGUUACGgGuCG-CG-GCa----GUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 25383 0.67 0.805898
Target:  5'- aACGuugGCCCGGCGCCGaUUgcGCUcacaaaGGAc -3'
miRNA:   3'- -UGUua-CGGGUCGCGGC-AGuuCGA------CCU- -5'
6987 3' -56.5 NC_001875.2 + 4683 0.67 0.805898
Target:  5'- cACAAUGCgCUcgGGCGCCGUaaaaagaGGGCUGu- -3'
miRNA:   3'- -UGUUACG-GG--UCGCGGCAg------UUCGACcu -5'
6987 3' -56.5 NC_001875.2 + 33072 0.67 0.794035
Target:  5'- cGCGcgGCUCcagacuuugauggcGGCGCCGUCGcGGCUGa- -3'
miRNA:   3'- -UGUuaCGGG--------------UCGCGGCAGU-UCGACcu -5'
6987 3' -56.5 NC_001875.2 + 20804 0.67 0.78754
Target:  5'- cGCAGUGCgCgGGCGUCGUCGcAGCg--- -3'
miRNA:   3'- -UGUUACG-GgUCGCGGCAGU-UCGaccu -5'
6987 3' -56.5 NC_001875.2 + 109840 0.67 0.78754
Target:  5'- gGCAGUGCCgGcggauuugcuGCGCgCGUuugcCAAGCUGGc -3'
miRNA:   3'- -UGUUACGGgU----------CGCG-GCA----GUUCGACCu -5'
6987 3' -56.5 NC_001875.2 + 77050 0.67 0.778139
Target:  5'- cGCGGUG-CUAGUGCCGcCcGGUUGGGa -3'
miRNA:   3'- -UGUUACgGGUCGCGGCaGuUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 38516 0.68 0.739272
Target:  5'- aGCAAaccUGCUgAGCGCuCGgcCGAGCUGGu -3'
miRNA:   3'- -UGUU---ACGGgUCGCG-GCa-GUUCGACCu -5'
6987 3' -56.5 NC_001875.2 + 119063 0.68 0.739272
Target:  5'- cGCAuGUGCgCGGCGCCcc--GGCUGGAc -3'
miRNA:   3'- -UGU-UACGgGUCGCGGcaguUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 130921 0.68 0.739272
Target:  5'- gACGcgGCCCuGCaGUCGUUAAGCcGGu -3'
miRNA:   3'- -UGUuaCGGGuCG-CGGCAGUUCGaCCu -5'
6987 3' -56.5 NC_001875.2 + 87814 0.68 0.719218
Target:  5'- cGCGAUGCCgGGCuGCgGUaCAGcacGCUGGGc -3'
miRNA:   3'- -UGUUACGGgUCG-CGgCA-GUU---CGACCU- -5'
6987 3' -56.5 NC_001875.2 + 114933 0.68 0.70907
Target:  5'- cACGAgGCCC-GCGCCGUCGucgaUGGGc -3'
miRNA:   3'- -UGUUaCGGGuCGCGGCAGUucg-ACCU- -5'
6987 3' -56.5 NC_001875.2 + 73216 0.68 0.70907
Target:  5'- uGCAGcGCCuCAGCacugGCCGUCAGGCUu-- -3'
miRNA:   3'- -UGUUaCGG-GUCG----CGGCAGUUCGAccu -5'
6987 3' -56.5 NC_001875.2 + 13091 0.69 0.698854
Target:  5'- aGCAGgccGCCCAccauGUGCCG-C-AGCUGGAu -3'
miRNA:   3'- -UGUUa--CGGGU----CGCGGCaGuUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 104670 0.69 0.685487
Target:  5'- gACGGUGCUuagucgcagcuacgCAGCGgCGacCAAGCUGGAc -3'
miRNA:   3'- -UGUUACGG--------------GUCGCgGCa-GUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 7882 0.69 0.678257
Target:  5'- aACAAgcGCCgCGGCaGuUUGUCAAGCUGGAg -3'
miRNA:   3'- -UGUUa-CGG-GUCG-C-GGCAGUUCGACCU- -5'
6987 3' -56.5 NC_001875.2 + 70858 0.69 0.678257
Target:  5'- uGCGGUGCgCCAGCGCCGacccgcuuUCGAGaacaaucguuCUGGu -3'
miRNA:   3'- -UGUUACG-GGUCGCGGC--------AGUUC----------GACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.