miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 5' -55.9 NC_001875.2 + 96842 1.06 0.003421
Target:  5'- gCGCCUUGUUUGACGGCGCGCGCACAAu -3'
miRNA:   3'- -GCGGAACAAACUGCCGCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 93980 0.76 0.350824
Target:  5'- cCGCCguuuuguaaUGUUUG-UGGUGCGCGCGCAGc -3'
miRNA:   3'- -GCGGa--------ACAAACuGCCGCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 113674 0.74 0.400991
Target:  5'- cCGCCacag-UGGCGGCGuCGCGCGCGc -3'
miRNA:   3'- -GCGGaacaaACUGCCGC-GCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 54013 0.74 0.418699
Target:  5'- gGCCU----UGGCGGCGCGCGCGu-- -3'
miRNA:   3'- gCGGAacaaACUGCCGCGCGCGUguu -5'
6987 5' -55.9 NC_001875.2 + 82041 0.74 0.418699
Target:  5'- aGCCagaaguUUGUUgggGGCGGCGCGCaGUACAGc -3'
miRNA:   3'- gCGG------AACAAa--CUGCCGCGCG-CGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 91877 0.74 0.44613
Target:  5'- gCGCCUgcugGUgcGGCGGCGggucgggcaacCGCGCGCAAa -3'
miRNA:   3'- -GCGGAa---CAaaCUGCCGC-----------GCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 9587 0.73 0.455495
Target:  5'- gGCCUgcgGUUagcgGugGGCGCGUGCAaCGAc -3'
miRNA:   3'- gCGGAa--CAAa---CugCCGCGCGCGU-GUU- -5'
6987 5' -55.9 NC_001875.2 + 8501 0.73 0.474536
Target:  5'- gCGCCguccgUGugGGCGcCGCGCACu- -3'
miRNA:   3'- -GCGGaacaaACugCCGC-GCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 37039 0.72 0.523766
Target:  5'- gGCCg----UGcACGGCGCGUGCACGc -3'
miRNA:   3'- gCGGaacaaAC-UGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 127397 0.72 0.54401
Target:  5'- aGCCUggccaaaGUgcUGGCGGCGCGCGUcaGCAu -3'
miRNA:   3'- gCGGAa------CAa-ACUGCCGCGCGCG--UGUu -5'
6987 5' -55.9 NC_001875.2 + 127951 0.72 0.551157
Target:  5'- aGCCUUGUacagccugcccagcUUGGCGGCGCG-GUGCu- -3'
miRNA:   3'- gCGGAACA--------------AACUGCCGCGCgCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 91126 0.71 0.574827
Target:  5'- gGCgUUGUagUUGAUGaCGCGCGCGCGg -3'
miRNA:   3'- gCGgAACA--AACUGCcGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 125649 0.71 0.585194
Target:  5'- gCGCUUUGaa--ACGGCGCGCggGCACAAa -3'
miRNA:   3'- -GCGGAACaaacUGCCGCGCG--CGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 112720 0.71 0.595596
Target:  5'- cCGCCgUGguaGGCGcGuCGCGCGCACAGc -3'
miRNA:   3'- -GCGGaACaaaCUGC-C-GCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 41458 0.71 0.616476
Target:  5'- gCGCCgg--UUG-CGGCGCGCGCGg-- -3'
miRNA:   3'- -GCGGaacaAACuGCCGCGCGCGUguu -5'
6987 5' -55.9 NC_001875.2 + 85278 0.71 0.616476
Target:  5'- gCGCCccgaacacgGUUUGcgcggGCGGCGCGgGCGCGGg -3'
miRNA:   3'- -GCGGaa-------CAAAC-----UGCCGCGCgCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 39308 0.71 0.616476
Target:  5'- gCGCUgcacaccGUgccGGCGGCGUGCGCGCGc -3'
miRNA:   3'- -GCGGaa-----CAaa-CUGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 34099 0.7 0.626939
Target:  5'- uGCCgggGUUgcACGaGCGCGCGCGCu- -3'
miRNA:   3'- gCGGaa-CAAacUGC-CGCGCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 79286 0.7 0.626939
Target:  5'- uGUCUg---UGGCGcGCGUGCGCGCAu -3'
miRNA:   3'- gCGGAacaaACUGC-CGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 37665 0.7 0.631125
Target:  5'- gCGCCUgauagccaacGACGGCGaugaCGCGCACAAg -3'
miRNA:   3'- -GCGGAacaaa-----CUGCCGC----GCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.