miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 5' -55.9 NC_001875.2 + 741 0.67 0.836782
Target:  5'- uGCCagguaccaacuuuuUUGUUgcacauggggcagcUGACGGCG-GCGCGCGGa -3'
miRNA:   3'- gCGG--------------AACAA--------------ACUGCCGCgCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 2275 0.69 0.719213
Target:  5'- gGCCaUG-UUGACGucgugauGCGCGCGCGCc- -3'
miRNA:   3'- gCGGaACaAACUGC-------CGCGCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 2536 0.66 0.857988
Target:  5'- aCGCCgggccgGUgaacaACGGCGCGUcggGCGCAAa -3'
miRNA:   3'- -GCGGaa----CAaac--UGCCGCGCG---CGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 8501 0.73 0.474536
Target:  5'- gCGCCguccgUGugGGCGcCGCGCACu- -3'
miRNA:   3'- -GCGGaacaaACugCCGC-GCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 9587 0.73 0.455495
Target:  5'- gGCCUgcgGUUagcgGugGGCGCGUGCAaCGAc -3'
miRNA:   3'- gCGGAa--CAAa---CugCCGCGCGCGU-GUU- -5'
6987 5' -55.9 NC_001875.2 + 13847 0.67 0.816036
Target:  5'- aCGUCUgacuugGACaaauGCGCGCGCGCAAc -3'
miRNA:   3'- -GCGGAacaaa-CUGc---CGCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 14159 0.66 0.880659
Target:  5'- aGCCUUcagacacgUGAUGGgGcCGUGCGCAAa -3'
miRNA:   3'- gCGGAAcaa-----ACUGCCgC-GCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 16924 0.7 0.647868
Target:  5'- gGCCUcgUGUUUGAgcgcauCGGCGCGuUGCGCc- -3'
miRNA:   3'- gCGGA--ACAAACU------GCCGCGC-GCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 18141 0.67 0.833399
Target:  5'- aCGCCacUGUgaguuacUGguGCGGCGCGCGCgACGc -3'
miRNA:   3'- -GCGGa-ACAa------AC--UGCCGCGCGCG-UGUu -5'
6987 5' -55.9 NC_001875.2 + 18679 0.68 0.765873
Target:  5'- uGCCauaucaaACGGCGCGCGCGCc- -3'
miRNA:   3'- gCGGaacaaacUGCCGCGCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 20912 0.66 0.849996
Target:  5'- uCGCaUUGUUcgUGugGGCGCGC-CAUg- -3'
miRNA:   3'- -GCGgAACAA--ACugCCGCGCGcGUGuu -5'
6987 5' -55.9 NC_001875.2 + 21338 0.66 0.880659
Target:  5'- cCGCCUUG-UUGACGagcaGCGCcGUGUGCu- -3'
miRNA:   3'- -GCGGAACaAACUGC----CGCG-CGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 24276 0.67 0.797975
Target:  5'- aG-CUUGUgcGACGGCGC-CGCGCu- -3'
miRNA:   3'- gCgGAACAaaCUGCCGCGcGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 31994 0.67 0.807089
Target:  5'- gGCCgguuUGUgagcGGCGGCGaCGCaGCGCAc -3'
miRNA:   3'- gCGGa---ACAaa--CUGCCGC-GCG-CGUGUu -5'
6987 5' -55.9 NC_001875.2 + 32474 0.7 0.637405
Target:  5'- gCGCUUUGgccacUUGGCGG-GCGCGCcCAAg -3'
miRNA:   3'- -GCGGAACa----AACUGCCgCGCGCGuGUU- -5'
6987 5' -55.9 NC_001875.2 + 34099 0.7 0.626939
Target:  5'- uGCCgggGUUgcACGaGCGCGCGCGCu- -3'
miRNA:   3'- gCGGaa-CAAacUGC-CGCGCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 34170 0.68 0.769732
Target:  5'- gCGCUUUGUucgUUGccguCGGCGuCGCGCAUu- -3'
miRNA:   3'- -GCGGAACA---AACu---GCCGC-GCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 34408 0.67 0.833399
Target:  5'- uGCaagUGgaaaacGACGGCGCGuUGCGCAAa -3'
miRNA:   3'- gCGga-ACaaa---CUGCCGCGC-GCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 37039 0.72 0.523766
Target:  5'- gGCCg----UGcACGGCGCGUGCACGc -3'
miRNA:   3'- gCGGaacaaAC-UGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 37665 0.7 0.631125
Target:  5'- gCGCCUgauagccaacGACGGCGaugaCGCGCACAAg -3'
miRNA:   3'- -GCGGAacaaa-----CUGCCGC----GCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.