miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 5' -55.9 NC_001875.2 + 38227 0.67 0.816036
Target:  5'- aCGUCagGUUUGACGaggcggaaGCGCGCGUcuACAAc -3'
miRNA:   3'- -GCGGaaCAAACUGC--------CGCGCGCG--UGUU- -5'
6987 5' -55.9 NC_001875.2 + 18679 0.68 0.765873
Target:  5'- uGCCauaucaaACGGCGCGCGCGCc- -3'
miRNA:   3'- gCGGaacaaacUGCCGCGCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 68840 0.68 0.779288
Target:  5'- uGCCUggcg-GACGGgucgcaCGCGUGCGCGAg -3'
miRNA:   3'- gCGGAacaaaCUGCC------GCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 79084 0.67 0.788705
Target:  5'- gGCCgcg-UUGGCGuaGUGCGCAUAAa -3'
miRNA:   3'- gCGGaacaAACUGCcgCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 69694 0.67 0.797975
Target:  5'- gCGCgaUUGUUUGACGucauggacGCGCGuCGCGCu- -3'
miRNA:   3'- -GCGg-AACAAACUGC--------CGCGC-GCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 31994 0.67 0.807089
Target:  5'- gGCCgguuUGUgagcGGCGGCGaCGCaGCGCAc -3'
miRNA:   3'- gCGGa---ACAaa--CUGCCGC-GCG-CGUGUu -5'
6987 5' -55.9 NC_001875.2 + 53920 0.67 0.807089
Target:  5'- gCGCCgUUGcg-GGCGcGUugGCGCGCACGAu -3'
miRNA:   3'- -GCGG-AACaaaCUGC-CG--CGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 113072 0.67 0.807089
Target:  5'- aGCUggcUUUGAUGGCGaCGCGCGuCAGc -3'
miRNA:   3'- gCGGaacAAACUGCCGC-GCGCGU-GUU- -5'
6987 5' -55.9 NC_001875.2 + 13847 0.67 0.816036
Target:  5'- aCGUCUgacuugGACaaauGCGCGCGCGCAAc -3'
miRNA:   3'- -GCGGAacaaa-CUGc---CGCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 44379 0.68 0.758097
Target:  5'- aGCCgguacacaauUUUGGgcacguCGGCGCGCGCGCAc -3'
miRNA:   3'- gCGGaac-------AAACU------GCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 103437 0.69 0.709028
Target:  5'- uGCUgUGUUUGcuggucuGCGGCGuCGUGCACGc -3'
miRNA:   3'- gCGGaACAAAC-------UGCCGC-GCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 129554 0.7 0.657273
Target:  5'- gGCC-------ACGGCGCGCGCGCAu -3'
miRNA:   3'- gCGGaacaaacUGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 54013 0.74 0.418699
Target:  5'- gGCCU----UGGCGGCGCGCGCGu-- -3'
miRNA:   3'- gCGGAacaaACUGCCGCGCGCGUguu -5'
6987 5' -55.9 NC_001875.2 + 8501 0.73 0.474536
Target:  5'- gCGCCguccgUGugGGCGcCGCGCACu- -3'
miRNA:   3'- -GCGGaacaaACugCCGC-GCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 37039 0.72 0.523766
Target:  5'- gGCCg----UGcACGGCGCGUGCACGc -3'
miRNA:   3'- gCGGaacaaAC-UGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 127951 0.72 0.551157
Target:  5'- aGCCUUGUacagccugcccagcUUGGCGGCGCG-GUGCu- -3'
miRNA:   3'- gCGGAACA--------------AACUGCCGCGCgCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 39308 0.71 0.616476
Target:  5'- gCGCUgcacaccGUgccGGCGGCGUGCGCGCGc -3'
miRNA:   3'- -GCGGaa-----CAaa-CUGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 85278 0.71 0.616476
Target:  5'- gCGCCccgaacacgGUUUGcgcggGCGGCGCGgGCGCGGg -3'
miRNA:   3'- -GCGGaa-------CAAAC-----UGCCGCGCgCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 37665 0.7 0.631125
Target:  5'- gCGCCUgauagccaacGACGGCGaugaCGCGCACAAg -3'
miRNA:   3'- -GCGGAacaaa-----CUGCCGC----GCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 16924 0.7 0.647868
Target:  5'- gGCCUcgUGUUUGAgcgcauCGGCGCGuUGCGCc- -3'
miRNA:   3'- gCGGA--ACAAACU------GCCGCGC-GCGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.