miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 107851 0.7 0.598607
Target:  5'- --uGCGACGCGCGCGAGUuggucgaaacGCUGCAu- -3'
miRNA:   3'- uucCGUUGCGCGUGCUCA----------CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 3047 0.7 0.630537
Target:  5'- uGGGCAGCGCGUAaGAG-GCgCGCAGc -3'
miRNA:   3'- uUCCGUUGCGCGUgCUCaCG-GUGUUu -5'
6988 3' -55.6 NC_001875.2 + 21261 0.7 0.641195
Target:  5'- cAGGC-GCGCGCGCGGcgcgGCUACGAGc -3'
miRNA:   3'- uUCCGuUGCGCGUGCUca--CGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 76760 0.69 0.651845
Target:  5'- cAAGG--ACGCGCuggcCGAGUGCUACAGc -3'
miRNA:   3'- -UUCCguUGCGCGu---GCUCACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 18158 0.69 0.651845
Target:  5'- uGGuGCGGCGCGCGCGAcgccGCCACu-- -3'
miRNA:   3'- uUC-CGUUGCGCGUGCUca--CGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 39671 0.69 0.662478
Target:  5'- -cGGCGGCGCGCggcgGCGAGcUGCUAgAGu -3'
miRNA:   3'- uuCCGUUGCGCG----UGCUC-ACGGUgUUu -5'
6988 3' -55.6 NC_001875.2 + 83011 0.69 0.673084
Target:  5'- -cGGCGucagcuggaccGCGCGCAgCGAGUgcGCCACGu- -3'
miRNA:   3'- uuCCGU-----------UGCGCGU-GCUCA--CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 94671 0.69 0.683654
Target:  5'- uGGGcCAGCGCGCggcACGGGUGCUGgAAc -3'
miRNA:   3'- uUCC-GUUGCGCG---UGCUCACGGUgUUu -5'
6988 3' -55.6 NC_001875.2 + 126981 0.69 0.683654
Target:  5'- --cGCAGCGUGCACGAgcuGUGCaCGCGu- -3'
miRNA:   3'- uucCGUUGCGCGUGCU---CACG-GUGUuu -5'
6988 3' -55.6 NC_001875.2 + 104475 0.69 0.694178
Target:  5'- cGGGcGCAACGUGCugGuGaGCCGCAu- -3'
miRNA:   3'- -UUC-CGUUGCGCGugCuCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 9987 0.69 0.694178
Target:  5'- cAGGGCGuACGUGCACGcGcuugugaaaaacUGCCACAAc -3'
miRNA:   3'- -UUCCGU-UGCGCGUGCuC------------ACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 77192 0.69 0.704646
Target:  5'- -cGGCGACgGCGUuccggACGAggcGUGCCGCAAc -3'
miRNA:   3'- uuCCGUUG-CGCG-----UGCU---CACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 18998 0.68 0.715047
Target:  5'- -cGGCAGUGCGCGC-AG-GCCGCAAc -3'
miRNA:   3'- uuCCGUUGCGCGUGcUCaCGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 110820 0.68 0.715047
Target:  5'- cAGGUgGACGCGCugGuGcGCCGCGGAc -3'
miRNA:   3'- uUCCG-UUGCGCGugCuCaCGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 79869 0.68 0.715047
Target:  5'- -uGGCGcgugguccACGCGCGCGcGUGCgGCAc- -3'
miRNA:   3'- uuCCGU--------UGCGCGUGCuCACGgUGUuu -5'
6988 3' -55.6 NC_001875.2 + 33481 0.68 0.725372
Target:  5'- -uGGCGcgccGCGCGCugGGGUGCgC-CAAc -3'
miRNA:   3'- uuCCGU----UGCGCGugCUCACG-GuGUUu -5'
6988 3' -55.6 NC_001875.2 + 89923 0.68 0.73561
Target:  5'- aAGGGCGGCGCGUccGCG-G-GCCACu-- -3'
miRNA:   3'- -UUCCGUUGCGCG--UGCuCaCGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 33030 0.68 0.745749
Target:  5'- uAAGcGCAGCGCG-GCGGGcGCCGCGc- -3'
miRNA:   3'- -UUC-CGUUGCGCgUGCUCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 51939 0.68 0.745749
Target:  5'- -cGuGCGGCGCuacuuuggGCGCGAcGUGCCGCAc- -3'
miRNA:   3'- uuC-CGUUGCG--------CGUGCU-CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 41809 0.68 0.745749
Target:  5'- -cGGC-ACGCGCGCcGGcGCCGCGGc -3'
miRNA:   3'- uuCCGuUGCGCGUGcUCaCGGUGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.