Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6988 | 3' | -55.6 | NC_001875.2 | + | 97544 | 1.04 | 0.004041 |
Target: 5'- gAAGGCAACGCGCACGAGUGCCACAAAg -3' miRNA: 3'- -UUCCGUUGCGCGUGCUCACGGUGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 51709 | 0.83 | 0.113179 |
Target: 5'- --aGCGACGCGCACGAGUGCgACGAc -3' miRNA: 3'- uucCGUUGCGCGUGCUCACGgUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 77421 | 0.83 | 0.119511 |
Target: 5'- cAGGGCAACGCGCGCGuuGGUGCCAa--- -3' miRNA: 3'- -UUCCGUUGCGCGUGC--UCACGGUguuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 126831 | 0.77 | 0.275058 |
Target: 5'- cGAGGCGGCGCaaaguGCACaAGUGCCGCAc- -3' miRNA: 3'- -UUCCGUUGCG-----CGUGcUCACGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 85299 | 0.76 | 0.325637 |
Target: 5'- cGGGCGGCGCggGCGCGGGcauUGCCGCGGg -3' miRNA: 3'- uUCCGUUGCG--CGUGCUC---ACGGUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 77965 | 0.75 | 0.338918 |
Target: 5'- -cGGCGGCGCGCACGAccaacaggccgacgGUGCCAg--- -3' miRNA: 3'- uuCCGUUGCGCGUGCU--------------CACGGUguuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 103328 | 0.75 | 0.374241 |
Target: 5'- cGGGCGACGCGUgcGCGAcGgcuaGCCACAAAa -3' miRNA: 3'- uUCCGUUGCGCG--UGCU-Ca---CGGUGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 69230 | 0.74 | 0.391499 |
Target: 5'- cGGGCGACGCGCGCu-GUGCCGa--- -3' miRNA: 3'- uUCCGUUGCGCGUGcuCACGGUguuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 68844 | 0.74 | 0.418338 |
Target: 5'- -uGGCGgacgggucgcacGCGUGCGCGAGUGCCcCGAc -3' miRNA: 3'- uuCCGU------------UGCGCGUGCUCACGGuGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 95243 | 0.73 | 0.446267 |
Target: 5'- aAGGGCGACGCGCAgCGGcuGcGCCGCAu- -3' miRNA: 3'- -UUCCGUUGCGCGU-GCU--CaCGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 84414 | 0.73 | 0.446267 |
Target: 5'- -cGGCGGCGCGUAUaGGUGCCAUc-- -3' miRNA: 3'- uuCCGUUGCGCGUGcUCACGGUGuuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 108998 | 0.73 | 0.475204 |
Target: 5'- cAGGCugGACGCGUACGucGUGCCGCc-- -3' miRNA: 3'- uUCCG--UUGCGCGUGCu-CACGGUGuuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 35386 | 0.72 | 0.505048 |
Target: 5'- gGAGGCGcugcuguccgugGCGCGCGCGAGcgacGCCgACAAGc -3' miRNA: 3'- -UUCCGU------------UGCGCGUGCUCa---CGG-UGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 13908 | 0.72 | 0.515176 |
Target: 5'- -cGGCGGCGCGCACGccgGCCuGCAGc -3' miRNA: 3'- uuCCGUUGCGCGUGCucaCGG-UGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 100877 | 0.71 | 0.53567 |
Target: 5'- cGAGGCGcaGCGCGCGCGuGggcGCCAUg-- -3' miRNA: 3'- -UUCCGU--UGCGCGUGCuCa--CGGUGuuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 28391 | 0.71 | 0.556442 |
Target: 5'- --cGCGGCGUGCACGAc-GCCGCAGAc -3' miRNA: 3'- uucCGUUGCGCGUGCUcaCGGUGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 43315 | 0.71 | 0.586948 |
Target: 5'- -cGGC-GCGCGCGCGGGUcggcgugguugccGCCGCGc- -3' miRNA: 3'- uuCCGuUGCGCGUGCUCA-------------CGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 107851 | 0.7 | 0.598607 |
Target: 5'- --uGCGACGCGCGCGAGUuggucgaaacGCUGCAu- -3' miRNA: 3'- uucCGUUGCGCGUGCUCA----------CGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 99594 | 0.7 | 0.598607 |
Target: 5'- aAAGGCGGCGCGCAgccaauuUGCCGCAGu -3' miRNA: 3'- -UUCCGUUGCGCGUgcuc---ACGGUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 29581 | 0.7 | 0.598607 |
Target: 5'- --uGCAACGCGCGCGAGcGCuCACc-- -3' miRNA: 3'- uucCGUUGCGCGUGCUCaCG-GUGuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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