miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 33481 0.68 0.725372
Target:  5'- -uGGCGcgccGCGCGCugGGGUGCgC-CAAc -3'
miRNA:   3'- uuCCGU----UGCGCGugCUCACG-GuGUUu -5'
6988 3' -55.6 NC_001875.2 + 107851 0.7 0.598607
Target:  5'- --uGCGACGCGCGCGAGUuggucgaaacGCUGCAu- -3'
miRNA:   3'- uucCGUUGCGCGUGCUCA----------CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 21261 0.7 0.641195
Target:  5'- cAGGC-GCGCGCGCGGcgcgGCUACGAGc -3'
miRNA:   3'- uUCCGuUGCGCGUGCUca--CGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 18158 0.69 0.651845
Target:  5'- uGGuGCGGCGCGCGCGAcgccGCCACu-- -3'
miRNA:   3'- uUC-CGUUGCGCGUGCUca--CGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 39671 0.69 0.662478
Target:  5'- -cGGCGGCGCGCggcgGCGAGcUGCUAgAGu -3'
miRNA:   3'- uuCCGUUGCGCG----UGCUC-ACGGUgUUu -5'
6988 3' -55.6 NC_001875.2 + 83011 0.69 0.673084
Target:  5'- -cGGCGucagcuggaccGCGCGCAgCGAGUgcGCCACGu- -3'
miRNA:   3'- uuCCGU-----------UGCGCGU-GCUCA--CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 9987 0.69 0.694178
Target:  5'- cAGGGCGuACGUGCACGcGcuugugaaaaacUGCCACAAc -3'
miRNA:   3'- -UUCCGU-UGCGCGUGCuC------------ACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 110820 0.68 0.715047
Target:  5'- cAGGUgGACGCGCugGuGcGCCGCGGAc -3'
miRNA:   3'- uUCCG-UUGCGCGugCuCaCGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 18998 0.68 0.715047
Target:  5'- -cGGCAGUGCGCGC-AG-GCCGCAAc -3'
miRNA:   3'- uuCCGUUGCGCGUGcUCaCGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 99594 0.7 0.598607
Target:  5'- aAAGGCGGCGCGCAgccaauuUGCCGCAGu -3'
miRNA:   3'- -UUCCGUUGCGCGUgcuc---ACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 29581 0.7 0.598607
Target:  5'- --uGCAACGCGCGCGAGcGCuCACc-- -3'
miRNA:   3'- uucCGUUGCGCGUGCUCaCG-GUGuuu -5'
6988 3' -55.6 NC_001875.2 + 43315 0.71 0.586948
Target:  5'- -cGGC-GCGCGCGCGGGUcggcgugguugccGCCGCGc- -3'
miRNA:   3'- uuCCGuUGCGCGUGCUCA-------------CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 77421 0.83 0.119511
Target:  5'- cAGGGCAACGCGCGCGuuGGUGCCAa--- -3'
miRNA:   3'- -UUCCGUUGCGCGUGC--UCACGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 126831 0.77 0.275058
Target:  5'- cGAGGCGGCGCaaaguGCACaAGUGCCGCAc- -3'
miRNA:   3'- -UUCCGUUGCG-----CGUGcUCACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 85299 0.76 0.325637
Target:  5'- cGGGCGGCGCggGCGCGGGcauUGCCGCGGg -3'
miRNA:   3'- uUCCGUUGCG--CGUGCUC---ACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 103328 0.75 0.374241
Target:  5'- cGGGCGACGCGUgcGCGAcGgcuaGCCACAAAa -3'
miRNA:   3'- uUCCGUUGCGCG--UGCU-Ca---CGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 69230 0.74 0.391499
Target:  5'- cGGGCGACGCGCGCu-GUGCCGa--- -3'
miRNA:   3'- uUCCGUUGCGCGUGcuCACGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 68844 0.74 0.418338
Target:  5'- -uGGCGgacgggucgcacGCGUGCGCGAGUGCCcCGAc -3'
miRNA:   3'- uuCCGU------------UGCGCGUGCUCACGGuGUUu -5'
6988 3' -55.6 NC_001875.2 + 84414 0.73 0.446267
Target:  5'- -cGGCGGCGCGUAUaGGUGCCAUc-- -3'
miRNA:   3'- uuCCGUUGCGCGUGcUCACGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 35386 0.72 0.505048
Target:  5'- gGAGGCGcugcuguccgugGCGCGCGCGAGcgacGCCgACAAGc -3'
miRNA:   3'- -UUCCGU------------UGCGCGUGCUCa---CGG-UGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.