miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 3047 0.7 0.630537
Target:  5'- uGGGCAGCGCGUAaGAG-GCgCGCAGc -3'
miRNA:   3'- uUCCGUUGCGCGUgCUCaCG-GUGUUu -5'
6988 3' -55.6 NC_001875.2 + 5919 0.67 0.785126
Target:  5'- -cGGCAugGCGUugGguAGcGCCGCGc- -3'
miRNA:   3'- uuCCGUugCGCGugC--UCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 6729 0.67 0.762734
Target:  5'- cGGGCGacauaaaccgcaucACGCGCagcaACGAuGUGCCGCGc- -3'
miRNA:   3'- uUCCGU--------------UGCGCG----UGCU-CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 7436 0.67 0.81313
Target:  5'- gAGGGCAacuGCGCGCcgGCGAuUGCgGCGGu -3'
miRNA:   3'- -UUCCGU---UGCGCG--UGCUcACGgUGUUu -5'
6988 3' -55.6 NC_001875.2 + 9987 0.69 0.694178
Target:  5'- cAGGGCGuACGUGCACGcGcuugugaaaaacUGCCACAAc -3'
miRNA:   3'- -UUCCGU-UGCGCGUGCuC------------ACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 13908 0.72 0.515176
Target:  5'- -cGGCGGCGCGCACGccgGCCuGCAGc -3'
miRNA:   3'- uuCCGUUGCGCGUGCucaCGG-UGUUu -5'
6988 3' -55.6 NC_001875.2 + 18018 0.67 0.774508
Target:  5'- uGGGGCGcuACGCGCGCGAcauugacGUGCaauGCGAc -3'
miRNA:   3'- -UUCCGU--UGCGCGUGCU-------CACGg--UGUUu -5'
6988 3' -55.6 NC_001875.2 + 18158 0.69 0.651845
Target:  5'- uGGuGCGGCGCGCGCGAcgccGCCACu-- -3'
miRNA:   3'- uUC-CGUUGCGCGUGCUca--CGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 18998 0.68 0.715047
Target:  5'- -cGGCAGUGCGCGC-AG-GCCGCAAc -3'
miRNA:   3'- uuCCGUUGCGCGUGcUCaCGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 21261 0.7 0.641195
Target:  5'- cAGGC-GCGCGCGCGGcgcgGCUACGAGc -3'
miRNA:   3'- uUCCGuUGCGCGUGCUca--CGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 23266 0.66 0.830924
Target:  5'- cGGGCAGCGCaGCGCcAGcaccGCCGCGc- -3'
miRNA:   3'- uUCCGUUGCG-CGUGcUCa---CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 27980 0.66 0.830924
Target:  5'- uAAGGaccaaGGCGCGCGCGAGaccGuUCACAAAa -3'
miRNA:   3'- -UUCCg----UUGCGCGUGCUCa--C-GGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 28391 0.71 0.556442
Target:  5'- --cGCGGCGUGCACGAc-GCCGCAGAc -3'
miRNA:   3'- uucCGUUGCGCGUGCUcaCGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 29581 0.7 0.598607
Target:  5'- --uGCAACGCGCGCGAGcGCuCACc-- -3'
miRNA:   3'- uucCGUUGCGCGUGCUCaCG-GUGuuu -5'
6988 3' -55.6 NC_001875.2 + 31202 0.66 0.847934
Target:  5'- gGGGGCuGACGCGCACGcugcucauCCACGAGg -3'
miRNA:   3'- -UUCCG-UUGCGCGUGCucac----GGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 32786 0.66 0.839531
Target:  5'- --cGCGGCGUGgGCGGGcGCCGCGc- -3'
miRNA:   3'- uucCGUUGCGCgUGCUCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 33030 0.68 0.745749
Target:  5'- uAAGcGCAGCGCG-GCGGGcGCCGCGc- -3'
miRNA:   3'- -UUC-CGUUGCGCgUGCUCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 33481 0.68 0.725372
Target:  5'- -uGGCGcgccGCGCGCugGGGUGCgC-CAAc -3'
miRNA:   3'- uuCCGU----UGCGCGugCUCACG-GuGUUu -5'
6988 3' -55.6 NC_001875.2 + 35386 0.72 0.505048
Target:  5'- gGAGGCGcugcuguccgugGCGCGCGCGAGcgacGCCgACAAGc -3'
miRNA:   3'- -UUCCGU------------UGCGCGUGCUCa---CGG-UGUUU- -5'
6988 3' -55.6 NC_001875.2 + 37048 0.67 0.785126
Target:  5'- -cGGCGcgugcACGCGCGCGGacgcgGCCACGc- -3'
miRNA:   3'- uuCCGU-----UGCGCGUGCUca---CGGUGUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.