miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 3' -45.5 NC_001875.2 + 98517 1.13 0.016081
Target:  5'- gGGCGACAGCCGCGUUUUGAAAAUAUCc -3'
miRNA:   3'- -CCGCUGUCGGCGCAAAACUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 33279 0.83 0.652931
Target:  5'- cGGCGGCAGCagCGCGUUcUUGAGcacGGUGUCg -3'
miRNA:   3'- -CCGCUGUCG--GCGCAA-AACUU---UUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 73705 0.78 0.87256
Target:  5'- uGCGGCGGCUGCGgcugUUGggGuugGUCg -3'
miRNA:   3'- cCGCUGUCGGCGCaa--AACuuUua-UAG- -5'
6991 3' -45.5 NC_001875.2 + 72811 0.76 0.915461
Target:  5'- aGCGAUugGGCCGCGUUUUaauGAUGUCc -3'
miRNA:   3'- cCGCUG--UCGGCGCAAAAcuuUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 69777 0.76 0.933161
Target:  5'- uGGCGACGG-CGCGuUUUUGAGuGUGUUu -3'
miRNA:   3'- -CCGCUGUCgGCGC-AAAACUUuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 38839 0.74 0.964713
Target:  5'- cGGCGACAGaCCGCGaaaUGGAGuucAUCu -3'
miRNA:   3'- -CCGCUGUC-GGCGCaaaACUUUua-UAG- -5'
6991 3' -45.5 NC_001875.2 + 130108 0.73 0.981876
Target:  5'- uGGCGGCGGCgGCGgcgcGAccGGUGUCg -3'
miRNA:   3'- -CCGCUGUCGgCGCaaaaCUu-UUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 73609 0.73 0.981876
Target:  5'- cGGCGAUgggGGCCGaCGUUUUGAu------ -3'
miRNA:   3'- -CCGCUG---UCGGC-GCAAAACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 95058 0.72 0.987622
Target:  5'- cGGCGuuaGCGGCCaCGUUaUUGAGAGuUGUCa -3'
miRNA:   3'- -CCGC---UGUCGGcGCAA-AACUUUU-AUAG- -5'
6991 3' -45.5 NC_001875.2 + 66388 0.72 0.987622
Target:  5'- cGUGGcCAGCUGCGcaauguagUUGAAGAUGUCc -3'
miRNA:   3'- cCGCU-GUCGGCGCaa------AACUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 42213 0.72 0.989186
Target:  5'- cGCGGCGGCaCGCGUggUGcu--UGUCa -3'
miRNA:   3'- cCGCUGUCG-GCGCAaaACuuuuAUAG- -5'
6991 3' -45.5 NC_001875.2 + 42990 0.71 0.992969
Target:  5'- aGGCGGCGGCCGUugc--GAAGGUGg- -3'
miRNA:   3'- -CCGCUGUCGGCGcaaaaCUUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 98486 0.71 0.993963
Target:  5'- uGCGACuGCCGCGUgcgUGAu------ -3'
miRNA:   3'- cCGCUGuCGGCGCAaa-ACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 113637 0.71 0.993963
Target:  5'- cGGCGACGgcGCCGCGUaaucAAAGUcgCg -3'
miRNA:   3'- -CCGCUGU--CGGCGCAaaacUUUUAuaG- -5'
6991 3' -45.5 NC_001875.2 + 90611 0.71 0.99484
Target:  5'- cGCGACGGCCGaggccguguacaUGUUUUGGAAGc--- -3'
miRNA:   3'- cCGCUGUCGGC------------GCAAAACUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 29768 0.71 0.99484
Target:  5'- gGGCGucgccauguACGGCCGCGgg-UGGAcgggcGUGUCa -3'
miRNA:   3'- -CCGC---------UGUCGGCGCaaaACUUu----UAUAG- -5'
6991 3' -45.5 NC_001875.2 + 129556 0.71 0.99484
Target:  5'- cGGCG--GGCCgGCGUUUUGuaauuGUAUCg -3'
miRNA:   3'- -CCGCugUCGG-CGCAAAACuuu--UAUAG- -5'
6991 3' -45.5 NC_001875.2 + 79180 0.71 0.995612
Target:  5'- aGC-ACGGCCGUGUUgUGGuAAAUGUCc -3'
miRNA:   3'- cCGcUGUCGGCGCAAaACU-UUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 109126 0.7 0.996873
Target:  5'- cGGCGACGGCgGCGgucUUGGcgacgcAGAUAg- -3'
miRNA:   3'- -CCGCUGUCGgCGCaa-AACU------UUUAUag -5'
6991 3' -45.5 NC_001875.2 + 87465 0.7 0.996873
Target:  5'- uGCGACA-UCGCGUUUUGcAAAUcgCg -3'
miRNA:   3'- cCGCUGUcGGCGCAAAACuUUUAuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.