miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 3' -45.5 NC_001875.2 + 48858 0.67 0.999887
Target:  5'- cGGCGACGagcggcGCCGCGag--GAAAacguaguguuGUGUCc -3'
miRNA:   3'- -CCGCUGU------CGGCGCaaaaCUUU----------UAUAG- -5'
6991 3' -45.5 NC_001875.2 + 81368 0.69 0.998782
Target:  5'- cGCGcCGGCCGCGUcgcuccUGAuuGUGUUu -3'
miRNA:   3'- cCGCuGUCGGCGCAaa----ACUuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 130932 0.69 0.998782
Target:  5'- uGGCGGCGguuugcGCCGUGUgUUUGGAAAc--- -3'
miRNA:   3'- -CCGCUGU------CGGCGCA-AAACUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 26220 0.69 0.999357
Target:  5'- cGGCGACcagGGCCGCGUaccgGGGcAUGg- -3'
miRNA:   3'- -CCGCUG---UCGGCGCAaaa-CUUuUAUag -5'
6991 3' -45.5 NC_001875.2 + 63452 0.68 0.999487
Target:  5'- cGGCGGcCAGCCGCGaggcgUUGGu------ -3'
miRNA:   3'- -CCGCU-GUCGGCGCaa---AACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 77033 0.67 0.999806
Target:  5'- gGGCucGGCAGCCGCGUcgcggUGcuAGUGc- -3'
miRNA:   3'- -CCG--CUGUCGGCGCAaa---ACuuUUAUag -5'
6991 3' -45.5 NC_001875.2 + 65779 0.67 0.999826
Target:  5'- gGGCGGCGGCgCGuCGUcgUUGAgcgccagcuugagcgGAAUGUa -3'
miRNA:   3'- -CCGCUGUCG-GC-GCAa-AACU---------------UUUAUAg -5'
6991 3' -45.5 NC_001875.2 + 27722 0.67 0.999851
Target:  5'- aGGCGACGGgcaaCGCGU--UGcAAAUAUg -3'
miRNA:   3'- -CCGCUGUCg---GCGCAaaACuUUUAUAg -5'
6991 3' -45.5 NC_001875.2 + 118318 0.67 0.999851
Target:  5'- aGGCGGcCGGCCGCGcgcUGcAGGUGa- -3'
miRNA:   3'- -CCGCU-GUCGGCGCaaaACuUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 84450 0.69 0.998422
Target:  5'- cGGCGGCGGCgguagaccaugaugCGCGUgUUGucGAUGUa -3'
miRNA:   3'- -CCGCUGUCG--------------GCGCAaAACuuUUAUAg -5'
6991 3' -45.5 NC_001875.2 + 109126 0.7 0.996873
Target:  5'- cGGCGACGGCgGCGgucUUGGcgacgcAGAUAg- -3'
miRNA:   3'- -CCGCUGUCGgCGCaa-AACU------UUUAUag -5'
6991 3' -45.5 NC_001875.2 + 87465 0.7 0.996873
Target:  5'- uGCGACA-UCGCGUUUUGcAAAUcgCg -3'
miRNA:   3'- cCGCUGUcGGCGCAAAACuUUUAuaG- -5'
6991 3' -45.5 NC_001875.2 + 72811 0.76 0.915461
Target:  5'- aGCGAUugGGCCGCGUUUUaauGAUGUCc -3'
miRNA:   3'- cCGCUG--UCGGCGCAAAAcuuUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 69777 0.76 0.933161
Target:  5'- uGGCGACGG-CGCGuUUUUGAGuGUGUUu -3'
miRNA:   3'- -CCGCUGUCgGCGC-AAAACUUuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 73609 0.73 0.981876
Target:  5'- cGGCGAUgggGGCCGaCGUUUUGAu------ -3'
miRNA:   3'- -CCGCUG---UCGGC-GCAAAACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 66388 0.72 0.987622
Target:  5'- cGUGGcCAGCUGCGcaauguagUUGAAGAUGUCc -3'
miRNA:   3'- cCGCU-GUCGGCGCaa------AACUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 95058 0.72 0.987622
Target:  5'- cGGCGuuaGCGGCCaCGUUaUUGAGAGuUGUCa -3'
miRNA:   3'- -CCGC---UGUCGGcGCAA-AACUUUU-AUAG- -5'
6991 3' -45.5 NC_001875.2 + 42213 0.72 0.989186
Target:  5'- cGCGGCGGCaCGCGUggUGcu--UGUCa -3'
miRNA:   3'- cCGCUGUCG-GCGCAaaACuuuuAUAG- -5'
6991 3' -45.5 NC_001875.2 + 42990 0.71 0.992969
Target:  5'- aGGCGGCGGCCGUugc--GAAGGUGg- -3'
miRNA:   3'- -CCGCUGUCGGCGcaaaaCUUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 113637 0.71 0.993963
Target:  5'- cGGCGACGgcGCCGCGUaaucAAAGUcgCg -3'
miRNA:   3'- -CCGCUGU--CGGCGCAaaacUUUUAuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.