miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 3' -45.5 NC_001875.2 + 12847 0.67 0.999936
Target:  5'- cGGCGccggcuagcacGCAGCCGUGg-UUGGucGUGUUg -3'
miRNA:   3'- -CCGC-----------UGUCGGCGCaaAACUuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 24088 0.68 0.99968
Target:  5'- uGGCGcACAGuuGCGUcUUGAu------ -3'
miRNA:   3'- -CCGC-UGUCggCGCAaAACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 25997 0.67 0.999943
Target:  5'- cGGCGgcucgcuggaccccaACAGCCGCGUc--GAGGAa--- -3'
miRNA:   3'- -CCGC---------------UGUCGGCGCAaaaCUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 26220 0.69 0.999357
Target:  5'- cGGCGACcagGGCCGCGUaccgGGGcAUGg- -3'
miRNA:   3'- -CCGCUG---UCGGCGCAaaa-CUUuUAUag -5'
6991 3' -45.5 NC_001875.2 + 27224 0.67 0.999936
Target:  5'- cGGCGcacACGGCCGac----GAGGGUAUCa -3'
miRNA:   3'- -CCGC---UGUCGGCgcaaaaCUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 27722 0.67 0.999851
Target:  5'- aGGCGACGGgcaaCGCGU--UGcAAAUAUg -3'
miRNA:   3'- -CCGCUGUCg---GCGCAaaACuUUUAUAg -5'
6991 3' -45.5 NC_001875.2 + 29768 0.71 0.99484
Target:  5'- gGGCGucgccauguACGGCCGCGgg-UGGAcgggcGUGUCa -3'
miRNA:   3'- -CCGC---------UGUCGGCGCaaaACUUu----UAUAG- -5'
6991 3' -45.5 NC_001875.2 + 33279 0.83 0.652931
Target:  5'- cGGCGGCAGCagCGCGUUcUUGAGcacGGUGUCg -3'
miRNA:   3'- -CCGCUGUCG--GCGCAA-AACUU---UUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 33815 0.67 0.999887
Target:  5'- cGGCGcACGGCgCGCGggg-GAAAAa--- -3'
miRNA:   3'- -CCGC-UGUCG-GCGCaaaaCUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 38839 0.74 0.964713
Target:  5'- cGGCGACAGaCCGCGaaaUGGAGuucAUCu -3'
miRNA:   3'- -CCGCUGUC-GGCGCaaaACUUUua-UAG- -5'
6991 3' -45.5 NC_001875.2 + 42213 0.72 0.989186
Target:  5'- cGCGGCGGCaCGCGUggUGcu--UGUCa -3'
miRNA:   3'- cCGCUGUCG-GCGCAaaACuuuuAUAG- -5'
6991 3' -45.5 NC_001875.2 + 42990 0.71 0.992969
Target:  5'- aGGCGGCGGCCGUugc--GAAGGUGg- -3'
miRNA:   3'- -CCGCUGUCGGCGcaaaaCUUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 43596 0.66 0.999965
Target:  5'- cGGCGGCAGCgGCGg------------ -3'
miRNA:   3'- -CCGCUGUCGgCGCaaaacuuuuauag -5'
6991 3' -45.5 NC_001875.2 + 48858 0.67 0.999887
Target:  5'- cGGCGACGagcggcGCCGCGag--GAAAacguaguguuGUGUCc -3'
miRNA:   3'- -CCGCUGU------CGGCGCaaaaCUUU----------UAUAG- -5'
6991 3' -45.5 NC_001875.2 + 49461 0.69 0.998512
Target:  5'- aGCGACGgucGCCGCGUUgUGcaGAAAUAg- -3'
miRNA:   3'- cCGCUGU---CGGCGCAAaAC--UUUUAUag -5'
6991 3' -45.5 NC_001875.2 + 54151 0.67 0.999887
Target:  5'- cGGCGGCAGUCGCGc------------ -3'
miRNA:   3'- -CCGCUGUCGGCGCaaaacuuuuauag -5'
6991 3' -45.5 NC_001875.2 + 59042 0.66 0.999981
Target:  5'- gGGCGAaauuGCCGCGUUgc-AAAAcgcGUCg -3'
miRNA:   3'- -CCGCUgu--CGGCGCAAaacUUUUa--UAG- -5'
6991 3' -45.5 NC_001875.2 + 59893 0.68 0.99968
Target:  5'- cGGCGACAgGCUGCGcgcgGAGcgcGcgGUCa -3'
miRNA:   3'- -CCGCUGU-CGGCGCaaaaCUU---UuaUAG- -5'
6991 3' -45.5 NC_001875.2 + 61591 0.67 0.999887
Target:  5'- cGGCGACGGCUcgggcgccggcgGCGcUUcgGGcuGUGUCg -3'
miRNA:   3'- -CCGCUGUCGG------------CGC-AAaaCUuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 63452 0.68 0.999487
Target:  5'- cGGCGGcCAGCCGCGaggcgUUGGu------ -3'
miRNA:   3'- -CCGCU-GUCGGCGCaa---AACUuuuauag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.