miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 5' -54.3 NC_001875.2 + 98551 1.07 0.004633
Target:  5'- uACGACACCGUGCUCAAGAACGCGCUGc -3'
miRNA:   3'- -UGCUGUGGCACGAGUUCUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 89847 0.86 0.121818
Target:  5'- cCGAuuuuuucacCGCCGUGCUCAAGAACGgGCUGg -3'
miRNA:   3'- uGCU---------GUGGCACGAGUUCUUGCgCGAC- -5'
6991 5' -54.3 NC_001875.2 + 116998 0.82 0.19999
Target:  5'- gACGAgccCACCGUGUUCAaucaaaaccAGGGCGCGCUGa -3'
miRNA:   3'- -UGCU---GUGGCACGAGU---------UCUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 12011 0.78 0.357194
Target:  5'- -aGGCACCGUGUUgGAGAACGUGUg- -3'
miRNA:   3'- ugCUGUGGCACGAgUUCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 69202 0.74 0.518809
Target:  5'- cGCGGCGCCGacggccaguacgcuUGUUCGGGcgacGCGCGCUGu -3'
miRNA:   3'- -UGCUGUGGC--------------ACGAGUUCu---UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 74108 0.74 0.552266
Target:  5'- aGCGACGCCGUGCU----GGCGCGUg- -3'
miRNA:   3'- -UGCUGUGGCACGAguucUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 10280 0.74 0.562538
Target:  5'- uUGACGCCGUGguggUCGAGGccuuugccgacuACGCGCUGg -3'
miRNA:   3'- uGCUGUGGCACg---AGUUCU------------UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 31315 0.73 0.583227
Target:  5'- uGCGACGCaucuGUGUUCGAGuucAACGCGCa- -3'
miRNA:   3'- -UGCUGUGg---CACGAGUUC---UUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 65070 0.73 0.59363
Target:  5'- gGCGGCGCCaacacGCUgggCAAGGACGCGCUc -3'
miRNA:   3'- -UGCUGUGGca---CGA---GUUCUUGCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 101161 0.73 0.604062
Target:  5'- cACGugGCCGUGCgc---GugGCGCUGg -3'
miRNA:   3'- -UGCugUGGCACGaguucUugCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 23014 0.72 0.635459
Target:  5'- gGCGcGCACCGUGUUCA---GCGUGUUGg -3'
miRNA:   3'- -UGC-UGUGGCACGAGUucuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 74709 0.72 0.635459
Target:  5'- uUGGCcugGCCGUGUUCAAGAACGacCGCUu -3'
miRNA:   3'- uGCUG---UGGCACGAGUUCUUGC--GCGAc -5'
6991 5' -54.3 NC_001875.2 + 120754 0.72 0.656391
Target:  5'- gACGGgGCCGUGUcCAGG-GCGCGCg- -3'
miRNA:   3'- -UGCUgUGGCACGaGUUCuUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 75015 0.72 0.677241
Target:  5'- uGCGGCacgcagccgucgGCCGUGaaCGAGuACGCGCUGu -3'
miRNA:   3'- -UGCUG------------UGGCACgaGUUCuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 79835 0.71 0.684506
Target:  5'- cCGACACugCGUGCUCAgcuggcuaauguugGGGugGCGCg- -3'
miRNA:   3'- uGCUGUG--GCACGAGU--------------UCUugCGCGac -5'
6991 5' -54.3 NC_001875.2 + 77394 0.71 0.687612
Target:  5'- uGCGGCGCCGcgGCUaacGAccgccACGCGCUGu -3'
miRNA:   3'- -UGCUGUGGCa-CGAguuCU-----UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 65343 0.71 0.687612
Target:  5'- gGCGGCACCuauuacuacuacGUGCUCAAcGAaaaaaaccGCGCGCg- -3'
miRNA:   3'- -UGCUGUGG------------CACGAGUU-CU--------UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 35414 0.71 0.697936
Target:  5'- aGCGACGCCGacaaGCgCGAGuuuGCGCGCg- -3'
miRNA:   3'- -UGCUGUGGCa---CGaGUUCu--UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 128887 0.71 0.708201
Target:  5'- uCGACACCGcUGC-CGAGcaAGCGCGCc- -3'
miRNA:   3'- uGCUGUGGC-ACGaGUUC--UUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 49464 0.71 0.72852
Target:  5'- gACGGCGCCGUGgUUccGcGCGCGCc- -3'
miRNA:   3'- -UGCUGUGGCACgAGuuCuUGCGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.