miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 5' -54.3 NC_001875.2 + 2424 0.68 0.86447
Target:  5'- cGCG-CACCGUGCUC---AugGUGCUu -3'
miRNA:   3'- -UGCuGUGGCACGAGuucUugCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 7073 0.69 0.80461
Target:  5'- gGCGACGCCaccggccuGUGCgCAgacaugcAGcGCGCGCUGg -3'
miRNA:   3'- -UGCUGUGG--------CACGaGU-------UCuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 8482 0.66 0.939469
Target:  5'- cGCGuuuuuCACCG-GCUCAaaguagcaauuuaAGGGCGUGCg- -3'
miRNA:   3'- -UGCu----GUGGCaCGAGU-------------UCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 10280 0.74 0.562538
Target:  5'- uUGACGCCGUGguggUCGAGGccuuugccgacuACGCGCUGg -3'
miRNA:   3'- uGCUGUGGCACg---AGUUCU------------UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 10462 0.67 0.906603
Target:  5'- cGCGGCGgCGcGCUCAGuGAAUgGCGCUu -3'
miRNA:   3'- -UGCUGUgGCaCGAGUU-CUUG-CGCGAc -5'
6991 5' -54.3 NC_001875.2 + 10864 0.67 0.900176
Target:  5'- gACGACGCgGUgGCcgCGucGGugGCGCUGc -3'
miRNA:   3'- -UGCUGUGgCA-CGa-GUu-CUugCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 12011 0.78 0.357194
Target:  5'- -aGGCACCGUGUUgGAGAACGUGUg- -3'
miRNA:   3'- ugCUGUGGCACGAgUUCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 18256 0.67 0.900176
Target:  5'- uCGaACGCCGUGCUggccCAAuGGCGCGCc- -3'
miRNA:   3'- uGC-UGUGGCACGA----GUUcUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 19122 0.66 0.929835
Target:  5'- gACGAgGCCacGCUCGuGGGCcaaGCGCUGg -3'
miRNA:   3'- -UGCUgUGGcaCGAGUuCUUG---CGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 21499 0.67 0.900176
Target:  5'- gGCGACGCCGagUGCagccCAA--ACGCGCUa -3'
miRNA:   3'- -UGCUGUGGC--ACGa---GUUcuUGCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 23014 0.72 0.635459
Target:  5'- gGCGcGCACCGUGUUCA---GCGUGUUGg -3'
miRNA:   3'- -UGC-UGUGGCACGAGUucuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 25392 0.68 0.848616
Target:  5'- cCGGCGCCGauugcGCUCAcaaAGGACuGCGCa- -3'
miRNA:   3'- uGCUGUGGCa----CGAGU---UCUUG-CGCGac -5'
6991 5' -54.3 NC_001875.2 + 29439 0.67 0.896202
Target:  5'- cGCGACGCCGacacguaccuuguuuUGCUgaAAGAguuGCGCGCc- -3'
miRNA:   3'- -UGCUGUGGC---------------ACGAg-UUCU---UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 29550 0.66 0.922723
Target:  5'- uGCGGCgcGCCaauUGCUCGGGAgcucauucugcaacGCGCGCg- -3'
miRNA:   3'- -UGCUG--UGGc--ACGAGUUCU--------------UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 31315 0.73 0.583227
Target:  5'- uGCGACGCaucuGUGUUCGAGuucAACGCGCa- -3'
miRNA:   3'- -UGCUGUGg---CACGAGUUC---UUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 31600 0.66 0.918718
Target:  5'- cCGGCGCCGUGC-CGugggcGGAccacAUGCGCg- -3'
miRNA:   3'- uGCUGUGGCACGaGU-----UCU----UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 32132 0.66 0.923844
Target:  5'- uGCGAgCGCCGcauagcGCUCAacGGcggcgaaGACGCGCUGc -3'
miRNA:   3'- -UGCU-GUGGCa-----CGAGU--UC-------UUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 32423 0.69 0.805518
Target:  5'- cGCGGCGCUG-GC-CAAcAAUGCGCUGc -3'
miRNA:   3'- -UGCUGUGGCaCGaGUUcUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 35414 0.71 0.697936
Target:  5'- aGCGACGCCGacaaGCgCGAGuuuGCGCGCg- -3'
miRNA:   3'- -UGCUGUGGCa---CGaGUUCu--UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 36634 0.7 0.758319
Target:  5'- cGCGGCACaCGaGCUUgAAGAuggccgcgucguGCGCGCUGa -3'
miRNA:   3'- -UGCUGUG-GCaCGAG-UUCU------------UGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.