miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 5' -54.3 NC_001875.2 + 111989 0.68 0.86447
Target:  5'- cGCGACGCg--GC-CGAGucuuGCGCGCUGu -3'
miRNA:   3'- -UGCUGUGgcaCGaGUUCu---UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 88871 0.69 0.787066
Target:  5'- gACGcACACCGUGCUgGu-GAUGCGCg- -3'
miRNA:   3'- -UGC-UGUGGCACGAgUucUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 7073 0.69 0.80461
Target:  5'- gGCGACGCCaccggccuGUGCgCAgacaugcAGcGCGCGCUGg -3'
miRNA:   3'- -UGCUGUGG--------CACGaGU-------UCuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 39269 0.69 0.809131
Target:  5'- cGCGACGCgGggcgGCUucugcccgccgacacCAAGuGCGCGCUGc -3'
miRNA:   3'- -UGCUGUGgCa---CGA---------------GUUCuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 110100 0.69 0.831939
Target:  5'- cGCcACGCgCG-GCcagagCAAGAACGCGCUGu -3'
miRNA:   3'- -UGcUGUG-GCaCGa----GUUCUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 48032 0.69 0.831939
Target:  5'- cACGugGCCGccgcccacagGCaCGAGGGCGCGCg- -3'
miRNA:   3'- -UGCugUGGCa---------CGaGUUCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 79012 0.68 0.840377
Target:  5'- -gGACAgCGUGUcCGAGucGCGCGCUa -3'
miRNA:   3'- ugCUGUgGCACGaGUUCu-UGCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 110808 0.68 0.848616
Target:  5'- uACaACGCCGcGCagGuGGACGCGCUGg -3'
miRNA:   3'- -UGcUGUGGCaCGagUuCUUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 25392 0.68 0.848616
Target:  5'- cCGGCGCCGauugcGCUCAcaaAGGACuGCGCa- -3'
miRNA:   3'- uGCUGUGGCa----CGAGU---UCUUG-CGCGac -5'
6991 5' -54.3 NC_001875.2 + 54460 0.7 0.777617
Target:  5'- cGCGGCGCCGcacagcgugUGCggCAGGAcuuCGCGCUu -3'
miRNA:   3'- -UGCUGUGGC---------ACGa-GUUCUu--GCGCGAc -5'
6991 5' -54.3 NC_001875.2 + 36634 0.7 0.758319
Target:  5'- cGCGGCACaCGaGCUUgAAGAuggccgcgucguGCGCGCUGa -3'
miRNA:   3'- -UGCUGUG-GCaCGAG-UUCU------------UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 76961 0.7 0.738553
Target:  5'- gACGAguCCGcGUUCGGGAgcaACGUGCUGc -3'
miRNA:   3'- -UGCUguGGCaCGAGUUCU---UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 69202 0.74 0.518809
Target:  5'- cGCGGCGCCGacggccaguacgcuUGUUCGGGcgacGCGCGCUGu -3'
miRNA:   3'- -UGCUGUGGC--------------ACGAGUUCu---UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 74108 0.74 0.552266
Target:  5'- aGCGACGCCGUGCU----GGCGCGUg- -3'
miRNA:   3'- -UGCUGUGGCACGAguucUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 10280 0.74 0.562538
Target:  5'- uUGACGCCGUGguggUCGAGGccuuugccgacuACGCGCUGg -3'
miRNA:   3'- uGCUGUGGCACg---AGUUCU------------UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 75015 0.72 0.677241
Target:  5'- uGCGGCacgcagccgucgGCCGUGaaCGAGuACGCGCUGu -3'
miRNA:   3'- -UGCUG------------UGGCACgaGUUCuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 35414 0.71 0.697936
Target:  5'- aGCGACGCCGacaaGCgCGAGuuuGCGCGCg- -3'
miRNA:   3'- -UGCUGUGGCa---CGaGUUCu--UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 128887 0.71 0.708201
Target:  5'- uCGACACCGcUGC-CGAGcaAGCGCGCc- -3'
miRNA:   3'- uGCUGUGGC-ACGaGUUC--UUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 49464 0.71 0.72852
Target:  5'- gACGGCGCCGUGgUUccGcGCGCGCc- -3'
miRNA:   3'- -UGCUGUGGCACgAGuuCuUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 44009 0.7 0.738553
Target:  5'- -gGGCGCCGUGCcCA---GCGUGCUGu -3'
miRNA:   3'- ugCUGUGGCACGaGUucuUGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.