miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 3' -53.1 NC_001875.2 + 99338 1.12 0.003202
Target:  5'- cGCGAAGCGUCGUGUCCGCGCAACUUGg -3'
miRNA:   3'- -CGCUUCGCAGCACAGGCGCGUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 120647 0.81 0.28281
Target:  5'- gGCGcGGCGUCGUGcUCCacaacggcGCGCAACUUGu -3'
miRNA:   3'- -CGCuUCGCAGCAC-AGG--------CGCGUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 46579 0.79 0.357194
Target:  5'- uCGggGCGcUCGUGUCCGCGCcgAGCg-- -3'
miRNA:   3'- cGCuuCGC-AGCACAGGCGCG--UUGaac -5'
6994 3' -53.1 NC_001875.2 + 18437 0.78 0.416892
Target:  5'- cGCGAGGCG-CG-GUCCGCGUGGCg-- -3'
miRNA:   3'- -CGCUUCGCaGCaCAGGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 123360 0.74 0.614517
Target:  5'- gGCGcccGGCGUgGUGuuUCCGCGCGACgUGa -3'
miRNA:   3'- -CGCu--UCGCAgCAC--AGGCGCGUUGaAC- -5'
6994 3' -53.1 NC_001875.2 + 65783 0.74 0.656391
Target:  5'- gGCGgcGCGUCGUcGUUgaGCGcCAGCUUGa -3'
miRNA:   3'- -CGCuuCGCAGCA-CAGg-CGC-GUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 95374 0.72 0.74849
Target:  5'- gGCGGaaaacGGCGUCGUGUCCaauucgagcCGCAGCg-- -3'
miRNA:   3'- -CGCU-----UCGCAGCACAGGc--------GCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 111564 0.72 0.757341
Target:  5'- gGCGuggccacAAGCGUCGUGUUUcCGCAGCUg- -3'
miRNA:   3'- -CGC-------UUCGCAGCACAGGcGCGUUGAac -5'
6994 3' -53.1 NC_001875.2 + 10869 0.71 0.768031
Target:  5'- cGCGGuggccGCGUCgGUGgcgcugCCGCGCAACg-- -3'
miRNA:   3'- -CGCUu----CGCAG-CACa-----GGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 7837 0.71 0.768031
Target:  5'- uGUGAAGCGUg--GUCgCGCGCAACa-- -3'
miRNA:   3'- -CGCUUCGCAgcaCAG-GCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 1159 0.71 0.768031
Target:  5'- aGUGggGcCG-CGUG-CCGUGCAugUUGa -3'
miRNA:   3'- -CGCuuC-GCaGCACaGGCGCGUugAAC- -5'
6994 3' -53.1 NC_001875.2 + 10083 0.71 0.79637
Target:  5'- uGUGGAGCaaaUCGacgccgacaUGUCCGCGCAACa-- -3'
miRNA:   3'- -CGCUUCGc--AGC---------ACAGGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 67171 0.71 0.803701
Target:  5'- aCGAGGCGggCGUGgagauggaacgcCCGCGCAGCa-- -3'
miRNA:   3'- cGCUUCGCa-GCACa-----------GGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 111829 0.7 0.85665
Target:  5'- aGCGAGGCGUUGuUGUUgGCGaaCGACUc- -3'
miRNA:   3'- -CGCUUCGCAGC-ACAGgCGC--GUUGAac -5'
6994 3' -53.1 NC_001875.2 + 57709 0.69 0.886594
Target:  5'- cGCGAAacGCGUCGU---CGCGCGACa-- -3'
miRNA:   3'- -CGCUU--CGCAGCAcagGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 65790 0.69 0.893505
Target:  5'- cGCGcGGCGUCGgcgcgcggUGcCUGCGCGGCg-- -3'
miRNA:   3'- -CGCuUCGCAGC--------ACaGGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 112225 0.69 0.893505
Target:  5'- aGCGAGGCGUgGaaaaagUCGUGCAACUg- -3'
miRNA:   3'- -CGCUUCGCAgCaca---GGCGCGUUGAac -5'
6994 3' -53.1 NC_001875.2 + 125320 0.69 0.896202
Target:  5'- aGCGAcgaggaccgguggacGGCGgccagCGUGUUgGCGCGGCa-- -3'
miRNA:   3'- -CGCU---------------UCGCa----GCACAGgCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 7029 0.68 0.900175
Target:  5'- aCGuAAGCGagGUGgCCGCGC-GCUUGu -3'
miRNA:   3'- cGC-UUCGCagCACaGGCGCGuUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 44142 0.68 0.900175
Target:  5'- cGCGGAGCGcuuucCGUGUCCGCa-AACa-- -3'
miRNA:   3'- -CGCUUCGCa----GCACAGGCGcgUUGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.