miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 3' -53.1 NC_001875.2 + 53150 0.67 0.953272
Target:  5'- uGCGcGGUGUUGgccacCCGCGCAAUUUa -3'
miRNA:   3'- -CGCuUCGCAGCaca--GGCGCGUUGAAc -5'
6994 3' -53.1 NC_001875.2 + 17294 0.67 0.929835
Target:  5'- cUGGAGCGUCGUGagcgCCGC-CGAUg-- -3'
miRNA:   3'- cGCUUCGCAGCACa---GGCGcGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 64836 0.67 0.929835
Target:  5'- uGCGcuuGAGCccgaUUGUGUCgcUGCGCAGCUUGc -3'
miRNA:   3'- -CGC---UUCGc---AGCACAG--GCGCGUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 56451 0.67 0.935017
Target:  5'- gGUGAGGcCGguggCGggGUCCGCGCgcGugUUGg -3'
miRNA:   3'- -CGCUUC-GCa---GCa-CAGGCGCG--UugAAC- -5'
6994 3' -53.1 NC_001875.2 + 59253 0.67 0.935017
Target:  5'- cGCGAAGCGUaCGa----GCGCAAUUUGc -3'
miRNA:   3'- -CGCUUCGCA-GCacaggCGCGUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 110736 0.67 0.939951
Target:  5'- cGCGggGCG-CGUG-CaguuuaaGCGCGGCg-- -3'
miRNA:   3'- -CGCuuCGCaGCACaGg------CGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 40480 0.67 0.944636
Target:  5'- uGCcGGGCGUCaUGU-CGCGCAACg-- -3'
miRNA:   3'- -CGcUUCGCAGcACAgGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 86147 0.67 0.946441
Target:  5'- cGCGAGuCGUUGUGUucgucuuucaaaagcCCGCGCAGgUUu -3'
miRNA:   3'- -CGCUUcGCAGCACA---------------GGCGCGUUgAAc -5'
6994 3' -53.1 NC_001875.2 + 114983 0.67 0.953272
Target:  5'- -aGggGCGUacaCGUGcgcCCGCGUAGCg-- -3'
miRNA:   3'- cgCuuCGCA---GCACa--GGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 11936 0.68 0.924401
Target:  5'- cGCGgcGCGcCGacUGUgCGCGCGACc-- -3'
miRNA:   3'- -CGCuuCGCaGC--ACAgGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 50350 0.68 0.918718
Target:  5'- gGCGucguuGGCGUCGgg-CCGCGCGcgccACUg- -3'
miRNA:   3'- -CGCu----UCGCAGCacaGGCGCGU----UGAac -5'
6994 3' -53.1 NC_001875.2 + 127886 0.68 0.918718
Target:  5'- aGCGcGGCGUCGuUGUUgacaCGCuGCAGCUg- -3'
miRNA:   3'- -CGCuUCGCAGC-ACAG----GCG-CGUUGAac -5'
6994 3' -53.1 NC_001875.2 + 65783 0.74 0.656391
Target:  5'- gGCGgcGCGUCGUcGUUgaGCGcCAGCUUGa -3'
miRNA:   3'- -CGCuuCGCAGCA-CAGg-CGC-GUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 95374 0.72 0.74849
Target:  5'- gGCGGaaaacGGCGUCGUGUCCaauucgagcCGCAGCg-- -3'
miRNA:   3'- -CGCU-----UCGCAGCACAGGc--------GCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 111564 0.72 0.757341
Target:  5'- gGCGuggccacAAGCGUCGUGUUUcCGCAGCUg- -3'
miRNA:   3'- -CGC-------UUCGCAGCACAGGcGCGUUGAac -5'
6994 3' -53.1 NC_001875.2 + 7837 0.71 0.768031
Target:  5'- uGUGAAGCGUg--GUCgCGCGCAACa-- -3'
miRNA:   3'- -CGCUUCGCAgcaCAG-GCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 10869 0.71 0.768031
Target:  5'- cGCGGuggccGCGUCgGUGgcgcugCCGCGCAACg-- -3'
miRNA:   3'- -CGCUu----CGCAG-CACa-----GGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 10083 0.71 0.79637
Target:  5'- uGUGGAGCaaaUCGacgccgacaUGUCCGCGCAACa-- -3'
miRNA:   3'- -CGCUUCGc--AGC---------ACAGGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 57709 0.69 0.886594
Target:  5'- cGCGAAacGCGUCGU---CGCGCGACa-- -3'
miRNA:   3'- -CGCUU--CGCAGCAcagGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 7029 0.68 0.900175
Target:  5'- aCGuAAGCGagGUGgCCGCGC-GCUUGu -3'
miRNA:   3'- cGC-UUCGCagCACaGGCGCGuUGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.