miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 3' -53.1 NC_001875.2 + 1159 0.71 0.768031
Target:  5'- aGUGggGcCG-CGUG-CCGUGCAugUUGa -3'
miRNA:   3'- -CGCuuC-GCaGCACaGGCGCGUugAAC- -5'
6994 3' -53.1 NC_001875.2 + 5572 0.66 0.957228
Target:  5'- gGCGAcuguGCGguuuugCGUGUCgCGuCGCAACa-- -3'
miRNA:   3'- -CGCUu---CGCa-----GCACAG-GC-GCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 7029 0.68 0.900175
Target:  5'- aCGuAAGCGagGUGgCCGCGC-GCUUGu -3'
miRNA:   3'- cGC-UUCGCagCACaGGCGCGuUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 7837 0.71 0.768031
Target:  5'- uGUGAAGCGUg--GUCgCGCGCAACa-- -3'
miRNA:   3'- -CGCUUCGCAgcaCAG-GCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 10083 0.71 0.79637
Target:  5'- uGUGGAGCaaaUCGacgccgacaUGUCCGCGCAACa-- -3'
miRNA:   3'- -CGCUUCGc--AGC---------ACAGGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 10869 0.71 0.768031
Target:  5'- cGCGGuggccGCGUCgGUGgcgcugCCGCGCAACg-- -3'
miRNA:   3'- -CGCUu----CGCAG-CACa-----GGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 11936 0.68 0.924401
Target:  5'- cGCGgcGCGcCGacUGUgCGCGCGACc-- -3'
miRNA:   3'- -CGCuuCGCaGC--ACAgGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 14570 0.66 0.957228
Target:  5'- cGUGAAGCGcaUCGg--CCGCgGCAGCg-- -3'
miRNA:   3'- -CGCUUCGC--AGCacaGGCG-CGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 16760 0.68 0.918718
Target:  5'- aGCccGGCGUCGUGaCUGCGCGccGCg-- -3'
miRNA:   3'- -CGcuUCGCAGCACaGGCGCGU--UGaac -5'
6994 3' -53.1 NC_001875.2 + 17294 0.67 0.929835
Target:  5'- cUGGAGCGUCGUGagcgCCGC-CGAUg-- -3'
miRNA:   3'- cGCUUCGCAGCACa---GGCGcGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 18437 0.78 0.416892
Target:  5'- cGCGAGGCG-CG-GUCCGCGUGGCg-- -3'
miRNA:   3'- -CGCUUCGCaGCaCAGGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 29084 0.66 0.970756
Target:  5'- aGCGcugcAGCGcUCGUGcaaaggCCGCGCAgACUUu -3'
miRNA:   3'- -CGCu---UCGC-AGCACa-----GGCGCGU-UGAAc -5'
6994 3' -53.1 NC_001875.2 + 30925 0.66 0.957228
Target:  5'- aGCGAGcGCGgcgagCGUcUCCGCGC-GCUg- -3'
miRNA:   3'- -CGCUU-CGCa----GCAcAGGCGCGuUGAac -5'
6994 3' -53.1 NC_001875.2 + 33058 0.66 0.957228
Target:  5'- cGCGGauAGCGU----UCCGCGCGGCUc- -3'
miRNA:   3'- -CGCU--UCGCAgcacAGGCGCGUUGAac -5'
6994 3' -53.1 NC_001875.2 + 39080 0.66 0.964441
Target:  5'- uGCGccgcGGCGUCGUG-CUGUGcCAACg-- -3'
miRNA:   3'- -CGCu---UCGCAGCACaGGCGC-GUUGaac -5'
6994 3' -53.1 NC_001875.2 + 40480 0.67 0.944636
Target:  5'- uGCcGGGCGUCaUGU-CGCGCAACg-- -3'
miRNA:   3'- -CGcUUCGCAGcACAgGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 41529 0.66 0.957228
Target:  5'- gGCGgcGuUGUCGUGaCCGacgccUGCAACUUGc -3'
miRNA:   3'- -CGCuuC-GCAGCACaGGC-----GCGUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 43324 0.66 0.964441
Target:  5'- cGCGGgucGGCGUgGUugccgCCGCGCAccacguACUUGc -3'
miRNA:   3'- -CGCU---UCGCAgCAca---GGCGCGU------UGAAC- -5'
6994 3' -53.1 NC_001875.2 + 44142 0.68 0.900175
Target:  5'- cGCGGAGCGcuuucCGUGUCCGCa-AACa-- -3'
miRNA:   3'- -CGCUUCGCa----GCACAGGCGcgUUGaac -5'
6994 3' -53.1 NC_001875.2 + 46579 0.79 0.357194
Target:  5'- uCGggGCGcUCGUGUCCGCGCcgAGCg-- -3'
miRNA:   3'- cGCuuCGC-AGCACAGGCGCG--UUGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.