Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6996 | 5' | -48.2 | NC_001875.2 | + | 84417 | 0.66 | 0.998515 |
Target: 5'- ----cGGCGCGUauaggugccaucgGCggaUCGGGAGCGg -3' miRNA: 3'- uuuuaUCGUGCG-------------CGaaaAGCUCUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 126673 | 0.66 | 0.998544 |
Target: 5'- -----uGCACGCGCUga-CGAGcacguuGCGg -3' miRNA: 3'- uuuuauCGUGCGCGAaaaGCUCu-----CGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 26537 | 0.66 | 0.998544 |
Target: 5'- ----gAGCugGCGCUUgagUCGGcGuGCu -3' miRNA: 3'- uuuuaUCGugCGCGAAa--AGCU-CuCGc -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 100848 | 0.66 | 0.998544 |
Target: 5'- -----cGCGCGCGCguaaucuugcUUUUUGAGcGCGa -3' miRNA: 3'- uuuuauCGUGCGCG----------AAAAGCUCuCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 72572 | 0.66 | 0.997868 |
Target: 5'- ----gGGCGCGgGCgcugCGGGuGCGg -3' miRNA: 3'- uuuuaUCGUGCgCGaaaaGCUCuCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 110160 | 0.66 | 0.998233 |
Target: 5'- -----cGCGuCGCGCUcgUCGGGcGGCGu -3' miRNA: 3'- uuuuauCGU-GCGCGAaaAGCUC-UCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 46332 | 0.66 | 0.998233 |
Target: 5'- --cGUGGC-CGcCGCUUUUgGAGgAGCa -3' miRNA: 3'- uuuUAUCGuGC-GCGAAAAgCUC-UCGc -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 90438 | 0.67 | 0.995716 |
Target: 5'- --uGUAGaCGCGCGCgcagaggcgUCGGuGGGCGg -3' miRNA: 3'- uuuUAUC-GUGCGCGaaa------AGCU-CUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 122155 | 0.67 | 0.994965 |
Target: 5'- -----uGCACGCGCacaauuUUUUCGAcAGCGc -3' miRNA: 3'- uuuuauCGUGCGCG------AAAAGCUcUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 31553 | 0.67 | 0.994965 |
Target: 5'- -----uGCACGCGCUgcaggUUGGGcccGGCGg -3' miRNA: 3'- uuuuauCGUGCGCGAaa---AGCUC---UCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 47323 | 0.67 | 0.995716 |
Target: 5'- aAAGAUGacGCACGUGCUg-UCGGcGGCGg -3' miRNA: 3'- -UUUUAU--CGUGCGCGAaaAGCUcUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 27195 | 0.67 | 0.995716 |
Target: 5'- cAGGUGGCACGCGCUaggaUCGGccuugucGGCGc -3' miRNA: 3'- uUUUAUCGUGCGCGAaa--AGCUc------UCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 66474 | 0.67 | 0.994965 |
Target: 5'- -----cGCGCGCGCgguuuUUUUCGuuGAGCa -3' miRNA: 3'- uuuuauCGUGCGCG-----AAAAGCu-CUCGc -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 77415 | 0.67 | 0.996374 |
Target: 5'- -----cGcCACGCGCUgUUCGgcgacaAGAGCGg -3' miRNA: 3'- uuuuauC-GUGCGCGAaAAGC------UCUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 33298 | 0.67 | 0.994109 |
Target: 5'- cAAAGUAGCACuGCGggUUggCGAGcGCGu -3' miRNA: 3'- -UUUUAUCGUG-CGCgaAAa-GCUCuCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 65778 | 0.67 | 0.995716 |
Target: 5'- uGGGcgAGCACGCGCgcggCGucGGCGc -3' miRNA: 3'- -UUUuaUCGUGCGCGaaaaGCucUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 123505 | 0.67 | 0.995716 |
Target: 5'- gAGGAaGGCAUGgaCGUUgaugUUCGAGGGCGu -3' miRNA: 3'- -UUUUaUCGUGC--GCGAa---AAGCUCUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 85226 | 0.68 | 0.992049 |
Target: 5'- -cGGUAGCGC-CGCaugUCGAcGAGCGc -3' miRNA: 3'- uuUUAUCGUGcGCGaaaAGCU-CUCGC- -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 114684 | 0.68 | 0.987931 |
Target: 5'- ----cGGCGacCGUGCUUUUCGGGuGCc -3' miRNA: 3'- uuuuaUCGU--GCGCGAAAAGCUCuCGc -5' |
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6996 | 5' | -48.2 | NC_001875.2 | + | 110951 | 0.68 | 0.992049 |
Target: 5'- cGAcgGGCugGCGCUg--CaGGAGCa -3' miRNA: 3'- uUUuaUCGugCGCGAaaaGcUCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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