miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6996 5' -48.2 NC_001875.2 + 36650 0.7 0.968943
Target:  5'- gAAGAUGGCcgcgucguGCGCGCUgagcUCGGGGcGCGu -3'
miRNA:   3'- -UUUUAUCG--------UGCGCGAaa--AGCUCU-CGC- -5'
6996 5' -48.2 NC_001875.2 + 130239 0.97 0.067055
Target:  5'- aAAAAUAGCACGCGCcgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaaAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130305 0.97 0.071063
Target:  5'- aAAAAUAGCACGCGCcgUUCGAGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGCGCGaaAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130471 0.9 0.17561
Target:  5'- ---cUAGCACGCGCcgUUCGAGAGCGu -3'
miRNA:   3'- uuuuAUCGUGCGCGaaAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130111 0.77 0.712891
Target:  5'- ---cUAGCACaCGCcgUUCGAGAGCGu -3'
miRNA:   3'- uuuuAUCGUGcGCGaaAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 129981 0.74 0.875256
Target:  5'- aAAAAUAGCACGCGCcUUUCaaaAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGcucUCGC- -5'
6996 5' -48.2 NC_001875.2 + 26785 0.72 0.917374
Target:  5'- ----gAGCgACGCGCcg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGaaaAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 74120 0.71 0.944886
Target:  5'- ---cUGGCGCGUguucgccuagaGCUggagUUCGAGGGCGc -3'
miRNA:   3'- uuuuAUCGUGCG-----------CGAa---AAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 31980 0.7 0.965576
Target:  5'- --uGUGGCGCGCGUacggccggUUUGuGAGCGg -3'
miRNA:   3'- uuuUAUCGUGCGCGaa------AAGCuCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130173 0.97 0.067055
Target:  5'- aAAAAUAGCACGCGCcgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaaAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130047 0.97 0.067055
Target:  5'- aAAAAUAGCACGCGCcgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaaAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130533 0.98 0.054672
Target:  5'- aAAAAUAGCACGCGCcUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101329 1.07 0.016236
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGAAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101395 1.07 0.016236
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGAAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101461 1.07 0.016236
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGAAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101131 0.98 0.054672
Target:  5'- aAAAAUAGCACGCGCcUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101263 0.98 0.054672
Target:  5'- aAAAAUAGCACGCGCcUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101527 0.98 0.054672
Target:  5'- aAAAAUAGCACGCGCcUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 101593 0.98 0.054672
Target:  5'- aAAAAUAGCACGCGCcUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 130371 0.98 0.054672
Target:  5'- aAAAGUAGCACGCGCcUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGaAAAGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.