miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6997 3' -58.1 NC_001875.2 + 12326 0.66 0.80927
Target:  5'- aCGCGCCCGGccAGCgAGaGGUCGUguuugacggcuuCGCc -3'
miRNA:   3'- -GCGUGGGCUuuUCG-UC-CCAGCG------------GCGa -5'
6997 3' -58.1 NC_001875.2 + 79691 0.66 0.80927
Target:  5'- gGCACUCGAGgucgauGAGCGaguuGGGcCGCgGCa -3'
miRNA:   3'- gCGUGGGCUU------UUCGU----CCCaGCGgCGa -5'
6997 3' -58.1 NC_001875.2 + 4560 0.66 0.80927
Target:  5'- gCGCACgUCGgcAAGCAauGUUGCCGCg -3'
miRNA:   3'- -GCGUG-GGCuuUUCGUccCAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 130427 0.66 0.80927
Target:  5'- aCGCACCgCuAAAaauAGCacaccAGGG-CGCCGCUg -3'
miRNA:   3'- -GCGUGG-GcUUU---UCG-----UCCCaGCGGCGA- -5'
6997 3' -58.1 NC_001875.2 + 15090 0.66 0.795047
Target:  5'- aGCGCCUGGuuGAGGCGGGGUuuuucuaccaguaugUGuuuCCGCUu -3'
miRNA:   3'- gCGUGGGCU--UUUCGUCCCA---------------GC---GGCGA- -5'
6997 3' -58.1 NC_001875.2 + 47630 0.66 0.791432
Target:  5'- gCGUACCUauGAAGGCAGGG-CGCaagGCUc -3'
miRNA:   3'- -GCGUGGGc-UUUUCGUCCCaGCGg--CGA- -5'
6997 3' -58.1 NC_001875.2 + 128705 0.66 0.791432
Target:  5'- cCGCGUCCGcgcAGCGGGcuUCGCCGCc -3'
miRNA:   3'- -GCGUGGGCuuuUCGUCCc-AGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 7020 0.66 0.791432
Target:  5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3'
miRNA:   3'- gCGugGGCUU---UUCGUcCCAgCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 33545 0.66 0.782295
Target:  5'- aGCACgCGuu-GGCcacaguGcGGUCGCCGCg -3'
miRNA:   3'- gCGUGgGCuuuUCGu-----C-CCAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 69994 0.66 0.782295
Target:  5'- aGCACCgCGAGGauaaauAGCAGGaaaacgugCGCCGUg -3'
miRNA:   3'- gCGUGG-GCUUU------UCGUCCca------GCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 68836 0.66 0.782295
Target:  5'- gCGCugCCu---GGCGgacGGGUCGCaCGCg -3'
miRNA:   3'- -GCGugGGcuuuUCGU---CCCAGCG-GCGa -5'
6997 3' -58.1 NC_001875.2 + 38542 0.66 0.782295
Target:  5'- uGCAgCUCGu--GGCcGGGUUGCUGCg -3'
miRNA:   3'- gCGU-GGGCuuuUCGuCCCAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 110164 0.66 0.763627
Target:  5'- uCGCGCUCGucGGGCGGcGUCGCacugCGCUc -3'
miRNA:   3'- -GCGUGGGCuuUUCGUCcCAGCG----GCGA- -5'
6997 3' -58.1 NC_001875.2 + 42969 0.66 0.763627
Target:  5'- gCGCGCCaacaaugcuuUGAAAGGCGGcGGcCGuuGCg -3'
miRNA:   3'- -GCGUGG----------GCUUUUCGUC-CCaGCggCGa -5'
6997 3' -58.1 NC_001875.2 + 37774 0.66 0.763627
Target:  5'- gCGCAUguuuauggagCUGAAAcAGCAGGugugucguuuGUCGCCGCg -3'
miRNA:   3'- -GCGUG----------GGCUUU-UCGUCC----------CAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 83564 0.67 0.757933
Target:  5'- gGCACgCGGcgGAcacaugaggugucccGGCGGGG-CGCCGCc -3'
miRNA:   3'- gCGUGgGCU--UU---------------UCGUCCCaGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 21086 0.67 0.754115
Target:  5'- aCGCGC------GGCGGcGGUCGCCGCg -3'
miRNA:   3'- -GCGUGggcuuuUCGUC-CCAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 7253 0.67 0.754115
Target:  5'- cCGCGCUgcagCGGccuGGCGcGGGUCGCCGaCg -3'
miRNA:   3'- -GCGUGG----GCUuu-UCGU-CCCAGCGGC-Ga -5'
6997 3' -58.1 NC_001875.2 + 61634 0.67 0.754115
Target:  5'- gGCGCCuCGGGcgccCAGuGGUCGCCGUc -3'
miRNA:   3'- gCGUGG-GCUUuuc-GUC-CCAGCGGCGa -5'
6997 3' -58.1 NC_001875.2 + 5914 0.67 0.744495
Target:  5'- aGCGCCgGcauGGCGuuGGGUagCGCCGCg -3'
miRNA:   3'- gCGUGGgCuuuUCGU--CCCA--GCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.