miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6999 5' -54.9 NC_001875.2 + 102628 1.07 0.003027
Target:  5'- gUUUGCCAGCUUGGCCGCCAUCAACUGg -3'
miRNA:   3'- -AAACGGUCGAACCGGCGGUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 61527 0.78 0.273105
Target:  5'- -gUGCuCGcGCUUGGCgGCCAUCAugUGg -3'
miRNA:   3'- aaACG-GU-CGAACCGgCGGUAGUugAC- -5'
6999 5' -54.9 NC_001875.2 + 75543 0.77 0.293951
Target:  5'- --cGCCAuacGCUUGGgCGCCAUCGACg- -3'
miRNA:   3'- aaaCGGU---CGAACCgGCGGUAGUUGac -5'
6999 5' -54.9 NC_001875.2 + 85695 0.76 0.355521
Target:  5'- --cGaCCAGCUUGcgcGCCGCgAUCGACUGg -3'
miRNA:   3'- aaaC-GGUCGAAC---CGGCGgUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 90705 0.75 0.389542
Target:  5'- gUUGCCGGCgcGGCCGCCgGUCAAg-- -3'
miRNA:   3'- aAACGGUCGaaCCGGCGG-UAGUUgac -5'
6999 5' -54.9 NC_001875.2 + 27152 0.73 0.463625
Target:  5'- --cGuCCAGCUUGGUCGCCGcugcgUAGCUGc -3'
miRNA:   3'- aaaC-GGUCGAACCGGCGGUa----GUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 88068 0.71 0.607886
Target:  5'- --cGCCAGCagcgGGCCGCa--CAACUGc -3'
miRNA:   3'- aaaCGGUCGaa--CCGGCGguaGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 131059 0.71 0.618577
Target:  5'- --cGCCAugaacguuccGCgc-GCCGCCGUCAGCUGc -3'
miRNA:   3'- aaaCGGU----------CGaacCGGCGGUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 49873 0.7 0.665631
Target:  5'- cUUGCCGGCgccaaccaagUGGUCGUCGagcugcgcgugcuaaUCAGCUGg -3'
miRNA:   3'- aAACGGUCGa---------ACCGGCGGU---------------AGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 16001 0.7 0.682642
Target:  5'- gUUUGaCCGGCUgcugGGCCGCgagGUCAACg- -3'
miRNA:   3'- -AAAC-GGUCGAa---CCGGCGg--UAGUUGac -5'
6999 5' -54.9 NC_001875.2 + 85827 0.69 0.693217
Target:  5'- --cGCCAGCUgcgugGGCgGCCgAUCcuGCUGu -3'
miRNA:   3'- aaaCGGUCGAa----CCGgCGG-UAGu-UGAC- -5'
6999 5' -54.9 NC_001875.2 + 78042 0.69 0.703736
Target:  5'- -gUGCCGGCguugauguucUUGGCCGCguUguACUGc -3'
miRNA:   3'- aaACGGUCG----------AACCGGCGguAguUGAC- -5'
6999 5' -54.9 NC_001875.2 + 29208 0.69 0.734856
Target:  5'- --gGCCAGUUgaUGGCgGCCA--AGCUGg -3'
miRNA:   3'- aaaCGGUCGA--ACCGgCGGUagUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 53537 0.69 0.744034
Target:  5'- --gGCCguuuuaaGGCUguuguUGGCgGCCAUCAACUu -3'
miRNA:   3'- aaaCGG-------UCGA-----ACCGgCGGUAGUUGAc -5'
6999 5' -54.9 NC_001875.2 + 82201 0.69 0.745048
Target:  5'- --cGCCGGC--GGCCGCUcguGUCGccGCUGg -3'
miRNA:   3'- aaaCGGUCGaaCCGGCGG---UAGU--UGAC- -5'
6999 5' -54.9 NC_001875.2 + 55891 0.69 0.745048
Target:  5'- -gUGCCGa--UGGCCGCgGUCAGCUu -3'
miRNA:   3'- aaACGGUcgaACCGGCGgUAGUUGAc -5'
6999 5' -54.9 NC_001875.2 + 85031 0.68 0.765097
Target:  5'- -gUGCUAaCUUGcGCCuCCGUCAACUGc -3'
miRNA:   3'- aaACGGUcGAAC-CGGcGGUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 74170 0.68 0.774933
Target:  5'- --cGCCAGCUUGGaCGCguUUugcgAGCUGg -3'
miRNA:   3'- aaaCGGUCGAACCgGCGguAG----UUGAC- -5'
6999 5' -54.9 NC_001875.2 + 114182 0.68 0.794176
Target:  5'- --cGCCAGCUUcaCCGCCAgcgcgCGAUUGc -3'
miRNA:   3'- aaaCGGUCGAAccGGCGGUa----GUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 6507 0.68 0.794176
Target:  5'- --cGCCAacacGC-UGGCCGCCGUCcACc- -3'
miRNA:   3'- aaaCGGU----CGaACCGGCGGUAGuUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.