miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6999 5' -54.9 NC_001875.2 + 117362 0.66 0.864
Target:  5'- --gGCCGGC-UGGCCGUCGgggaGGCg- -3'
miRNA:   3'- aaaCGGUCGaACCGGCGGUag--UUGac -5'
6999 5' -54.9 NC_001875.2 + 85031 0.68 0.765097
Target:  5'- -gUGCUAaCUUGcGCCuCCGUCAACUGc -3'
miRNA:   3'- aaACGGUcGAAC-CGGcGGUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 74170 0.68 0.774933
Target:  5'- --cGCCAGCUUGGaCGCguUUugcgAGCUGg -3'
miRNA:   3'- aaaCGGUCGAACCgGCGguAG----UUGAC- -5'
6999 5' -54.9 NC_001875.2 + 6507 0.68 0.794176
Target:  5'- --cGCCAacacGC-UGGCCGCCGUCcACc- -3'
miRNA:   3'- aaaCGGU----CGaACCGGCGGUAGuUGac -5'
6999 5' -54.9 NC_001875.2 + 114182 0.68 0.794176
Target:  5'- --cGCCAGCUUcaCCGCCAgcgcgCGAUUGc -3'
miRNA:   3'- aaaCGGUCGAAccGGCGGUa----GUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 98749 0.67 0.830664
Target:  5'- -gUGCuCAGCcgcgacgGcGCCGCCAUCAAaguCUGg -3'
miRNA:   3'- aaACG-GUCGaa-----C-CGGCGGUAGUU---GAC- -5'
6999 5' -54.9 NC_001875.2 + 29282 0.67 0.839315
Target:  5'- --cGCCGGCggGG-CGCgGUCGugUGg -3'
miRNA:   3'- aaaCGGUCGaaCCgGCGgUAGUugAC- -5'
6999 5' -54.9 NC_001875.2 + 127964 0.66 0.855991
Target:  5'- -cUGcCCAGCUUGGCgGCgCGgu-GCUGc -3'
miRNA:   3'- aaAC-GGUCGAACCGgCG-GUaguUGAC- -5'
6999 5' -54.9 NC_001875.2 + 12298 0.66 0.864
Target:  5'- --aGCCGGCac-GCCGCCGUguGCg- -3'
miRNA:   3'- aaaCGGUCGaacCGGCGGUAguUGac -5'
6999 5' -54.9 NC_001875.2 + 55891 0.69 0.745048
Target:  5'- -gUGCCGa--UGGCCGCgGUCAGCUu -3'
miRNA:   3'- aaACGGUcgaACCGGCGgUAGUUGAc -5'
6999 5' -54.9 NC_001875.2 + 53537 0.69 0.744034
Target:  5'- --gGCCguuuuaaGGCUguuguUGGCgGCCAUCAACUu -3'
miRNA:   3'- aaaCGG-------UCGA-----ACCGgCGGUAGUUGAc -5'
6999 5' -54.9 NC_001875.2 + 78042 0.69 0.703736
Target:  5'- -gUGCCGGCguugauguucUUGGCCGCguUguACUGc -3'
miRNA:   3'- aaACGGUCG----------AACCGGCGguAguUGAC- -5'
6999 5' -54.9 NC_001875.2 + 61527 0.78 0.273105
Target:  5'- -gUGCuCGcGCUUGGCgGCCAUCAugUGg -3'
miRNA:   3'- aaACG-GU-CGAACCGgCGGUAGUugAC- -5'
6999 5' -54.9 NC_001875.2 + 85695 0.76 0.355521
Target:  5'- --cGaCCAGCUUGcgcGCCGCgAUCGACUGg -3'
miRNA:   3'- aaaC-GGUCGAAC---CGGCGgUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 90705 0.75 0.389542
Target:  5'- gUUGCCGGCgcGGCCGCCgGUCAAg-- -3'
miRNA:   3'- aAACGGUCGaaCCGGCGG-UAGUUgac -5'
6999 5' -54.9 NC_001875.2 + 27152 0.73 0.463625
Target:  5'- --cGuCCAGCUUGGUCGCCGcugcgUAGCUGc -3'
miRNA:   3'- aaaC-GGUCGAACCGGCGGUa----GUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 131059 0.71 0.618577
Target:  5'- --cGCCAugaacguuccGCgc-GCCGCCGUCAGCUGc -3'
miRNA:   3'- aaaCGGU----------CGaacCGGCGGUAGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 49873 0.7 0.665631
Target:  5'- cUUGCCGGCgccaaccaagUGGUCGUCGagcugcgcgugcuaaUCAGCUGg -3'
miRNA:   3'- aAACGGUCGa---------ACCGGCGGU---------------AGUUGAC- -5'
6999 5' -54.9 NC_001875.2 + 16001 0.7 0.682642
Target:  5'- gUUUGaCCGGCUgcugGGCCGCgagGUCAACg- -3'
miRNA:   3'- -AAAC-GGUCGAa---CCGGCGg--UAGUUGac -5'
6999 5' -54.9 NC_001875.2 + 85827 0.69 0.693217
Target:  5'- --cGCCAGCUgcgugGGCgGCCgAUCcuGCUGu -3'
miRNA:   3'- aaaCGGUCGAa----CCGgCGG-UAGu-UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.