Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 4448 | 0.66 | 0.886631 |
Target: 5'- --cGCCAGCacuUUGGCCaggcucugagcGCCGUCcGCg- -3' miRNA: 3'- aaaCGGUCG---AACCGG-----------CGGUAGuUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 4535 | 0.66 | 0.882277 |
Target: 5'- --cGCCGGCUgcgguuccugcgguuUgggGGCCGCCAgCAACg- -3' miRNA: 3'- aaaCGGUCGA---------------A---CCGGCGGUaGUUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 6507 | 0.68 | 0.794176 |
Target: 5'- --cGCCAacacGC-UGGCCGCCGUCcACc- -3' miRNA: 3'- aaaCGGU----CGaACCGGCGGUAGuUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 12298 | 0.66 | 0.864 |
Target: 5'- --aGCCGGCac-GCCGCCGUguGCg- -3' miRNA: 3'- aaaCGGUCGaacCGGCGGUAguUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 16001 | 0.7 | 0.682642 |
Target: 5'- gUUUGaCCGGCUgcugGGCCGCgagGUCAACg- -3' miRNA: 3'- -AAAC-GGUCGAa---CCGGCGg--UAGUUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 21982 | 0.68 | 0.794176 |
Target: 5'- --cGCCAGCUUGGCaaaCGCgCG-CAGCa- -3' miRNA: 3'- aaaCGGUCGAACCG---GCG-GUaGUUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 25187 | 0.66 | 0.879326 |
Target: 5'- --cGCCGGCaUUGacauguacaCCGCCGUCGACa- -3' miRNA: 3'- aaaCGGUCG-AACc--------GGCGGUAGUUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 27152 | 0.73 | 0.463625 |
Target: 5'- --cGuCCAGCUUGGUCGCCGcugcgUAGCUGc -3' miRNA: 3'- aaaC-GGUCGAACCGGCGGUa----GUUGAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 29208 | 0.69 | 0.734856 |
Target: 5'- --gGCCAGUUgaUGGCgGCCA--AGCUGg -3' miRNA: 3'- aaaCGGUCGA--ACCGgCGGUagUUGAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 29282 | 0.67 | 0.839315 |
Target: 5'- --cGCCGGCggGG-CGCgGUCGugUGg -3' miRNA: 3'- aaaCGGUCGaaCCgGCGgUAGUugAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 34761 | 0.66 | 0.871013 |
Target: 5'- --gGCCAGUUccugagcacgacgUGGuCCGCCAUCcACg- -3' miRNA: 3'- aaaCGGUCGA-------------ACC-GGCGGUAGuUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 49873 | 0.7 | 0.665631 |
Target: 5'- cUUGCCGGCgccaaccaagUGGUCGUCGagcugcgcgugcuaaUCAGCUGg -3' miRNA: 3'- aAACGGUCGa---------ACCGGCGGU---------------AGUUGAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 53537 | 0.69 | 0.744034 |
Target: 5'- --gGCCguuuuaaGGCUguuguUGGCgGCCAUCAACUu -3' miRNA: 3'- aaaCGG-------UCGA-----ACCGgCGGUAGUUGAc -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 55891 | 0.69 | 0.745048 |
Target: 5'- -gUGCCGa--UGGCCGCgGUCAGCUu -3' miRNA: 3'- aaACGGUcgaACCGGCGgUAGUUGAc -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 59448 | 0.66 | 0.871013 |
Target: 5'- --gGUCAGCUUGuuGCCGCCAaugaaauuagggcUCGuCUGg -3' miRNA: 3'- aaaCGGUCGAAC--CGGCGGU-------------AGUuGAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 61527 | 0.78 | 0.273105 |
Target: 5'- -gUGCuCGcGCUUGGCgGCCAUCAugUGg -3' miRNA: 3'- aaACG-GU-CGAACCGgCGGUAGUugAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 72739 | 0.66 | 0.886631 |
Target: 5'- --gGCCAGCga---CGCCGUCAGcCUGg -3' miRNA: 3'- aaaCGGUCGaaccgGCGGUAGUU-GAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 74170 | 0.68 | 0.774933 |
Target: 5'- --cGCCAGCUUGGaCGCguUUugcgAGCUGg -3' miRNA: 3'- aaaCGGUCGAACCgGCGguAG----UUGAC- -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 75543 | 0.77 | 0.293951 |
Target: 5'- --cGCCAuacGCUUGGgCGCCAUCGACg- -3' miRNA: 3'- aaaCGGU---CGAACCgGCGGUAGUUGac -5' |
|||||||
6999 | 5' | -54.9 | NC_001875.2 | + | 78042 | 0.69 | 0.703736 |
Target: 5'- -gUGCCGGCguugauguucUUGGCCGCguUguACUGc -3' miRNA: 3'- aaACGGUCG----------AACCGGCGguAguUGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home