miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7000 5' -59.3 NC_001875.2 + 102891 1.1 0.001099
Target:  5'- cGGAAAGCCGCGGCCGUACACGCCCCAc -3'
miRNA:   3'- -CCUUUCGGCGCCGGCAUGUGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 20713 0.77 0.21599
Target:  5'- gGGAAGGUgGCGccgugacgcauugcuGCCGUGCACGCCgCAa -3'
miRNA:   3'- -CCUUUCGgCGC---------------CGGCAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 57478 0.76 0.241156
Target:  5'- ----cGCCGCGGCCGcGCACGCCg-- -3'
miRNA:   3'- ccuuuCGGCGCCGGCaUGUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 117926 0.75 0.271234
Target:  5'- cGGcAAGCUGCaGGCCGgcgUGCGCGCCgCCGc -3'
miRNA:   3'- -CCuUUCGGCG-CCGGC---AUGUGCGG-GGU- -5'
7000 5' -59.3 NC_001875.2 + 62587 0.74 0.297412
Target:  5'- cGGcucGAGCCGCGGCCcaGCGCGCCg-- -3'
miRNA:   3'- -CCu--UUCGGCGCCGGcaUGUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 99852 0.74 0.304255
Target:  5'- ----cGCCGCucacaaaccGGCCGUACGCGCgCCAc -3'
miRNA:   3'- ccuuuCGGCG---------CCGGCAUGUGCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 91181 0.74 0.311219
Target:  5'- cGGAAugucGCCGCgcaacagccGGCgCGUGCGCGCCCa- -3'
miRNA:   3'- -CCUUu---CGGCG---------CCG-GCAUGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 64969 0.74 0.332833
Target:  5'- cGAAuuaGGCCGCGGUCGUGCACGUa--- -3'
miRNA:   3'- cCUU---UCGGCGCCGGCAUGUGCGgggu -5'
7000 5' -59.3 NC_001875.2 + 31242 0.72 0.387446
Target:  5'- ---cGGCCGCGGCCG---GCGCCCg- -3'
miRNA:   3'- ccuuUCGGCGCCGGCaugUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 117273 0.72 0.387446
Target:  5'- ----uGCCGCGGCCG-AUGCGCUUCAc -3'
miRNA:   3'- ccuuuCGGCGCCGGCaUGUGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 102758 0.72 0.404097
Target:  5'- uGGGAAcccgacgacgcGCCGUGGCagcaACACGCCCCu -3'
miRNA:   3'- -CCUUU-----------CGGCGCCGgca-UGUGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 36822 0.72 0.41259
Target:  5'- ----cGCCGCGGCaguUGCGCGCCCg- -3'
miRNA:   3'- ccuuuCGGCGCCGgc-AUGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 128004 0.72 0.41259
Target:  5'- uGGAGGCUGCGGCCGcgccgGCGUGCgCCGa -3'
miRNA:   3'- cCUUUCGGCGCCGGCa----UGUGCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 91639 0.72 0.421193
Target:  5'- cGAAuAGCCGCgcagcagcuGGCCGUACGCGUacggcacgCCCAu -3'
miRNA:   3'- cCUU-UCGGCG---------CCGGCAUGUGCG--------GGGU- -5'
7000 5' -59.3 NC_001875.2 + 128745 0.72 0.433416
Target:  5'- --cGAGCCGCGccccggcgcgugcacGCCGUGgGCGaCCCCGg -3'
miRNA:   3'- ccuUUCGGCGC---------------CGGCAUgUGC-GGGGU- -5'
7000 5' -59.3 NC_001875.2 + 41057 0.71 0.438717
Target:  5'- cGAgcGgCGUGGUCGUGCACGCCgUAa -3'
miRNA:   3'- cCUuuCgGCGCCGGCAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 51110 0.71 0.447635
Target:  5'- ---cAGUCGCGcGUCGUGCACGCCgUAa -3'
miRNA:   3'- ccuuUCGGCGC-CGGCAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 43466 0.71 0.447635
Target:  5'- ----cGCUGCGGuuGaGCACGCCCUu -3'
miRNA:   3'- ccuuuCGGCGCCggCaUGUGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 110899 0.71 0.453936
Target:  5'- uGGAcGGcCCGCGGgCGUuugagcuggccaugGCGCGCCCaCAc -3'
miRNA:   3'- -CCUuUC-GGCGCCgGCA--------------UGUGCGGG-GU- -5'
7000 5' -59.3 NC_001875.2 + 102073 0.71 0.474972
Target:  5'- -----cCCGCGGCCGUACauggcgACGCCCaCGa -3'
miRNA:   3'- ccuuucGGCGCCGGCAUG------UGCGGG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.