miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7000 5' -59.3 NC_001875.2 + 64482 0.69 0.551525
Target:  5'- uGGAcGAGUCGCGGuuGuUGC-CGCCCg- -3'
miRNA:   3'- -CCU-UUCGGCGCCggC-AUGuGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 102073 0.71 0.474972
Target:  5'- -----cCCGCGGCCGUACauggcgACGCCCaCGa -3'
miRNA:   3'- ccuuucGGCGCCGGCAUG------UGCGGG-GU- -5'
7000 5' -59.3 NC_001875.2 + 110247 0.7 0.522279
Target:  5'- cGGAGAGCUGUucgaacggcugGGCCG-GCugGCCgCGg -3'
miRNA:   3'- -CCUUUCGGCG-----------CCGGCaUGugCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 40085 0.7 0.531966
Target:  5'- -cGAGGCCGCGGCgcugACGCGCCaCUg -3'
miRNA:   3'- ccUUUCGGCGCCGgca-UGUGCGG-GGu -5'
7000 5' -59.3 NC_001875.2 + 100605 0.7 0.531966
Target:  5'- cGGGcgccGGCCGCGGCCGcUGuuUGCCUCGu -3'
miRNA:   3'- -CCUu---UCGGCGCCGGC-AUguGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 89975 0.69 0.540738
Target:  5'- aGGGAGCUcauugaaGUGGCCGUcaaGCGCCUCAa -3'
miRNA:   3'- cCUUUCGG-------CGCCGGCAug-UGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 120528 0.69 0.541716
Target:  5'- ----cGUgGCGGUCGUGCAgGCCaCCAu -3'
miRNA:   3'- ccuuuCGgCGCCGGCAUGUgCGG-GGU- -5'
7000 5' -59.3 NC_001875.2 + 61894 0.69 0.541716
Target:  5'- ----cGCCGUGGCCcgACACGCgCCGu -3'
miRNA:   3'- ccuuuCGGCGCCGGcaUGUGCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 95502 0.69 0.541716
Target:  5'- ----cGCCGcCGGCCGcgUACACgcgcaacaGCCCCAg -3'
miRNA:   3'- ccuuuCGGC-GCCGGC--AUGUG--------CGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 41824 0.71 0.474972
Target:  5'- ----cGCCGCGGCCaguUGCGCGUCCa- -3'
miRNA:   3'- ccuuuCGGCGCCGGc--AUGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 110899 0.71 0.453936
Target:  5'- uGGAcGGcCCGCGGgCGUuugagcuggccaugGCGCGCCCaCAc -3'
miRNA:   3'- -CCUuUC-GGCGCCgGCA--------------UGUGCGGG-GU- -5'
7000 5' -59.3 NC_001875.2 + 51110 0.71 0.447635
Target:  5'- ---cAGUCGCGcGUCGUGCACGCCgUAa -3'
miRNA:   3'- ccuuUCGGCGC-CGGCAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 117926 0.75 0.271234
Target:  5'- cGGcAAGCUGCaGGCCGgcgUGCGCGCCgCCGc -3'
miRNA:   3'- -CCuUUCGGCG-CCGGC---AUGUGCGG-GGU- -5'
7000 5' -59.3 NC_001875.2 + 62587 0.74 0.297412
Target:  5'- cGGcucGAGCCGCGGCCcaGCGCGCCg-- -3'
miRNA:   3'- -CCu--UUCGGCGCCGGcaUGUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 91181 0.74 0.311219
Target:  5'- cGGAAugucGCCGCgcaacagccGGCgCGUGCGCGCCCa- -3'
miRNA:   3'- -CCUUu---CGGCG---------CCG-GCAUGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 64969 0.74 0.332833
Target:  5'- cGAAuuaGGCCGCGGUCGUGCACGUa--- -3'
miRNA:   3'- cCUU---UCGGCGCCGGCAUGUGCGgggu -5'
7000 5' -59.3 NC_001875.2 + 117273 0.72 0.387446
Target:  5'- ----uGCCGCGGCCG-AUGCGCUUCAc -3'
miRNA:   3'- ccuuuCGGCGCCGGCaUGUGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 36822 0.72 0.41259
Target:  5'- ----cGCCGCGGCaguUGCGCGCCCg- -3'
miRNA:   3'- ccuuuCGGCGCCGgc-AUGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 128745 0.72 0.433416
Target:  5'- --cGAGCCGCGccccggcgcgugcacGCCGUGgGCGaCCCCGg -3'
miRNA:   3'- ccuUUCGGCGC---------------CGGCAUgUGC-GGGGU- -5'
7000 5' -59.3 NC_001875.2 + 43466 0.71 0.447635
Target:  5'- ----cGCUGCGGuuGaGCACGCCCUu -3'
miRNA:   3'- ccuuuCGGCGCCggCaUGUGCGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.