miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7000 5' -59.3 NC_001875.2 + 1161 0.7 0.531966
Target:  5'- -uGGGGCCGCGuGCCGUGCAUGUUg-- -3'
miRNA:   3'- ccUUUCGGCGC-CGGCAUGUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 2302 0.66 0.740346
Target:  5'- ----cGCCGUGGCCGcGCGCaGCUCg- -3'
miRNA:   3'- ccuuuCGGCGCCGGCaUGUG-CGGGgu -5'
7000 5' -59.3 NC_001875.2 + 3081 0.67 0.701404
Target:  5'- gGGGucGCCcaCGG-CGUGCACGCgCCGg -3'
miRNA:   3'- -CCUuuCGGc-GCCgGCAUGUGCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 4761 0.67 0.7083
Target:  5'- uGGAAugcuggccgccguuGGCCGCGGCUuugACuauuacagccgGCGCCCUg -3'
miRNA:   3'- -CCUU--------------UCGGCGCCGGca-UG-----------UGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 5122 0.68 0.640458
Target:  5'- cGGAAAGgucacguCCGCGGaCGUGCGcCGCUUCGg -3'
miRNA:   3'- -CCUUUC-------GGCGCCgGCAUGU-GCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 10409 0.68 0.621342
Target:  5'- cGGuAAAGgCGC-GCCGUGCAuccCGaCCCCAa -3'
miRNA:   3'- -CC-UUUCgGCGcCGGCAUGU---GC-GGGGU- -5'
7000 5' -59.3 NC_001875.2 + 12417 0.66 0.756487
Target:  5'- ----uGCCGCGcGCCaagcaggccguugcGUGCGCGCCgCGg -3'
miRNA:   3'- ccuuuCGGCGC-CGG--------------CAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 13528 0.68 0.631403
Target:  5'- ---cAGCgCGCGGCCG-GC-CGCCUCGa -3'
miRNA:   3'- ccuuUCG-GCGCCGGCaUGuGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 14221 0.66 0.749876
Target:  5'- ----cGCUGgGGCCGUGCgcaaaGCGCCUa- -3'
miRNA:   3'- ccuuuCGGCgCCGGCAUG-----UGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 16075 0.66 0.749876
Target:  5'- aGGAcGGCuCGCGGCgGUuugaaAUGCGCUgCAa -3'
miRNA:   3'- -CCUuUCG-GCGCCGgCA-----UGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 18241 0.66 0.721022
Target:  5'- cGGcccGCCGCcgacucgaacGCCGUGCugGCCCa- -3'
miRNA:   3'- -CCuuuCGGCGc---------CGGCAUGugCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 20713 0.77 0.21599
Target:  5'- gGGAAGGUgGCGccgugacgcauugcuGCCGUGCACGCCgCAa -3'
miRNA:   3'- -CCUUUCGgCGC---------------CGGCAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 20950 0.66 0.768626
Target:  5'- ----cGcCCGCGGCCGUccagcgcaaACGCGUCgCAa -3'
miRNA:   3'- ccuuuC-GGCGCCGGCA---------UGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 21097 0.67 0.68156
Target:  5'- cGGucGCCGCGcuuaaaCUGcACGCGCCCCGc -3'
miRNA:   3'- cCUuuCGGCGCc-----GGCaUGUGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 21494 0.67 0.690513
Target:  5'- ---uAGCUGCaGGCUGUgcuacacGCACGCCCa- -3'
miRNA:   3'- ccuuUCGGCG-CCGGCA-------UGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 31242 0.72 0.387446
Target:  5'- ---cGGCCGCGGCCG---GCGCCCg- -3'
miRNA:   3'- ccuuUCGGCGCCGGCaugUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 31672 0.69 0.555464
Target:  5'- uGGAcuGGGCCaGCGuGCCGgcguggaccgccgcuUGCGCGCCgCCGg -3'
miRNA:   3'- -CCU--UUCGG-CGC-CGGC---------------AUGUGCGG-GGU- -5'
7000 5' -59.3 NC_001875.2 + 33101 0.68 0.601252
Target:  5'- ----cGUCGCGGCUGaGCACGCaCCAc -3'
miRNA:   3'- ccuuuCGGCGCCGGCaUGUGCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 33467 0.68 0.611289
Target:  5'- ----cGUCGUGGUCGggGCGCGCCCa- -3'
miRNA:   3'- ccuuuCGGCGCCGGCa-UGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 36652 0.67 0.701404
Target:  5'- aGAuGGCCGC-GUCGUGCGCGCUg-- -3'
miRNA:   3'- cCUuUCGGCGcCGGCAUGUGCGGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.