miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7003 5' -49.7 NC_001875.2 + 104196 1.09 0.010565
Target:  5'- cAUUAUGCGACAAUGCGCGAACCACGGc -3'
miRNA:   3'- -UAAUACGCUGUUACGCGCUUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 11878 0.86 0.250757
Target:  5'- uUUGUGCGGCAgcgcguguuagaguuGUGCGCGAACgGCGGc -3'
miRNA:   3'- uAAUACGCUGU---------------UACGCGCUUGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 69942 0.76 0.689325
Target:  5'- ----cGUGACAcgGCGCGugucgGGCCACGGc -3'
miRNA:   3'- uaauaCGCUGUuaCGCGC-----UUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 89775 0.74 0.791593
Target:  5'- -gUcgGCGACGcgcucgugcacGUGCGCGAACgcagCGCGGg -3'
miRNA:   3'- uaAuaCGCUGU-----------UACGCGCUUG----GUGCC- -5'
7003 5' -49.7 NC_001875.2 + 63270 0.74 0.80017
Target:  5'- ----aGCGGCGccacgcgGUGCGCGAccgccgccGCCGCGGc -3'
miRNA:   3'- uaauaCGCUGU-------UACGCGCU--------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 85301 0.74 0.810465
Target:  5'- ----gGCGGCGcggGCGCGGgcauuGCCGCGGg -3'
miRNA:   3'- uaauaCGCUGUua-CGCGCU-----UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 97059 0.74 0.828615
Target:  5'- uGUUGUGCucGugGAUG-GCGGACCACGu -3'
miRNA:   3'- -UAAUACG--CugUUACgCGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 19117 0.73 0.870356
Target:  5'- -cUGUGCGcGCGAcGCGCcuACCACGGc -3'
miRNA:   3'- uaAUACGC-UGUUaCGCGcuUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 70201 0.72 0.892602
Target:  5'- ----aGCGGC-GUGuCGCGGGCCACGu -3'
miRNA:   3'- uaauaCGCUGuUAC-GCGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 67145 0.72 0.895398
Target:  5'- uGUUGcUGCGGCugucUGCGCGGgacagcgugguggacACCGCGGu -3'
miRNA:   3'- -UAAU-ACGCUGuu--ACGCGCU---------------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 113341 0.72 0.898835
Target:  5'- --cGUGCGGCGGgucggGCGCGGcugcgucGCUGCGGc -3'
miRNA:   3'- uaaUACGCUGUUa----CGCGCU-------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 9916 0.72 0.899514
Target:  5'- ----cGCGACuggcGCGCGGGCCGCa- -3'
miRNA:   3'- uaauaCGCUGuua-CGCGCUUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 37581 0.72 0.899514
Target:  5'- --gAUGCGcCg--GCGCGAgcGCCGCGGc -3'
miRNA:   3'- uaaUACGCuGuuaCGCGCU--UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 103007 0.72 0.902207
Target:  5'- --cGUGCGGCAAgugcgcugcggGCGUGAccacgugccccguuuGCCGCGGu -3'
miRNA:   3'- uaaUACGCUGUUa----------CGCGCU---------------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 36803 0.72 0.906168
Target:  5'- ---cUGC-ACGGUGCGCGuuacgcGCCGCGGc -3'
miRNA:   3'- uaauACGcUGUUACGCGCu-----UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 117341 0.71 0.912561
Target:  5'- ----cGCGGCGcgG-GCGAACCgGCGGg -3'
miRNA:   3'- uaauaCGCUGUuaCgCGCUUGG-UGCC- -5'
7003 5' -49.7 NC_001875.2 + 37102 0.71 0.912561
Target:  5'- ----cGCGugGGUGUGCGGG-CGCGGc -3'
miRNA:   3'- uaauaCGCugUUACGCGCUUgGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 111832 0.71 0.924551
Target:  5'- ----cGUGACGGcUGCGCGAGCCGgccaGGu -3'
miRNA:   3'- uaauaCGCUGUU-ACGCGCUUGGUg---CC- -5'
7003 5' -49.7 NC_001875.2 + 103330 0.71 0.930146
Target:  5'- ----gGCGACGcGUGCGCGAcggcuaGCCACa- -3'
miRNA:   3'- uaauaCGCUGU-UACGCGCU------UGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 101998 0.71 0.930146
Target:  5'- ---uUGCGGC-GUGCGCG-GCgGCGGu -3'
miRNA:   3'- uaauACGCUGuUACGCGCuUGgUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.