miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7003 5' -49.7 NC_001875.2 + 110882 0.69 0.965491
Target:  5'- ---uUGCGACGcguuUGCGCuGGAcggcCCGCGGg -3'
miRNA:   3'- uaauACGCUGUu---ACGCG-CUU----GGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 104966 0.7 0.940538
Target:  5'- -gUGUGCGGCGGcGgGCuGGugCACGGc -3'
miRNA:   3'- uaAUACGCUGUUaCgCG-CUugGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 42456 0.7 0.949876
Target:  5'- ----aGCGGCcgcUGCgGCGAGCCACGc -3'
miRNA:   3'- uaauaCGCUGuu-ACG-CGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 18990 0.69 0.961958
Target:  5'- uUUAUccaCGGCAGUGCGCGcaGGCCGCa- -3'
miRNA:   3'- uAAUAc--GCUGUUACGCGC--UUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 37340 0.69 0.961958
Target:  5'- uUUGUG-GACuuUGCGCGcGGCCGCGc -3'
miRNA:   3'- uAAUACgCUGuuACGCGC-UUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 98805 0.69 0.961958
Target:  5'- ----cGCGGCGcgGCGCccGCCGCGc -3'
miRNA:   3'- uaauaCGCUGUuaCGCGcuUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 47982 0.69 0.961958
Target:  5'- --cGUGCGAgCGggGCGuCGAGCCGCccuGGa -3'
miRNA:   3'- uaaUACGCU-GUuaCGC-GCUUGGUG---CC- -5'
7003 5' -49.7 NC_001875.2 + 18048 0.69 0.965491
Target:  5'- --aAUGCGAC-AUGCGCG--UgGCGGa -3'
miRNA:   3'- uaaUACGCUGuUACGCGCuuGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 59751 0.69 0.965491
Target:  5'- ----aGC-ACuuUGCGCGAAaCCACGGc -3'
miRNA:   3'- uaauaCGcUGuuACGCGCUU-GGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 103330 0.71 0.930146
Target:  5'- ----gGCGACGcGUGCGCGAcggcuaGCCACa- -3'
miRNA:   3'- uaauaCGCUGU-UACGCGCU------UGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 111832 0.71 0.924551
Target:  5'- ----cGUGACGGcUGCGCGAGCCGgccaGGu -3'
miRNA:   3'- uaauaCGCUGUU-ACGCGCUUGGUg---CC- -5'
7003 5' -49.7 NC_001875.2 + 117341 0.71 0.912561
Target:  5'- ----cGCGGCGcgG-GCGAACCgGCGGg -3'
miRNA:   3'- uaauaCGCUGUuaCgCGCUUGG-UGCC- -5'
7003 5' -49.7 NC_001875.2 + 11878 0.86 0.250757
Target:  5'- uUUGUGCGGCAgcgcguguuagaguuGUGCGCGAACgGCGGc -3'
miRNA:   3'- uAAUACGCUGU---------------UACGCGCUUGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 85301 0.74 0.810465
Target:  5'- ----gGCGGCGcggGCGCGGgcauuGCCGCGGg -3'
miRNA:   3'- uaauaCGCUGUua-CGCGCU-----UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 19117 0.73 0.870356
Target:  5'- -cUGUGCGcGCGAcGCGCcuACCACGGc -3'
miRNA:   3'- uaAUACGC-UGUUaCGCGcuUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 67145 0.72 0.895398
Target:  5'- uGUUGcUGCGGCugucUGCGCGGgacagcgugguggacACCGCGGu -3'
miRNA:   3'- -UAAU-ACGCUGuu--ACGCGCU---------------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 37581 0.72 0.899514
Target:  5'- --gAUGCGcCg--GCGCGAgcGCCGCGGc -3'
miRNA:   3'- uaaUACGCuGuuaCGCGCU--UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 9916 0.72 0.899514
Target:  5'- ----cGCGACuggcGCGCGGGCCGCa- -3'
miRNA:   3'- uaauaCGCUGuua-CGCGCUUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 36803 0.72 0.906168
Target:  5'- ---cUGC-ACGGUGCGCGuuacgcGCCGCGGc -3'
miRNA:   3'- uaauACGcUGUUACGCGCu-----UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 37102 0.71 0.912561
Target:  5'- ----cGCGugGGUGUGCGGG-CGCGGc -3'
miRNA:   3'- uaauaCGCugUUACGCGCUUgGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.