miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7003 5' -49.7 NC_001875.2 + 3133 0.69 0.968468
Target:  5'- ----gGCGGCGAagcccgcUGCGCGGAC-GCGGc -3'
miRNA:   3'- uaauaCGCUGUU-------ACGCGCUUGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 6916 0.66 0.994652
Target:  5'- --cGUGCGcucggcCGAggGCGUGGACCGCGc -3'
miRNA:   3'- uaaUACGCu-----GUUa-CGCGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 7087 0.67 0.992791
Target:  5'- ----gGCGGCAgcuacuacGUGCGCGGcucggACgGCGGc -3'
miRNA:   3'- uaauaCGCUGU--------UACGCGCU-----UGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 9916 0.72 0.899514
Target:  5'- ----cGCGACuggcGCGCGGGCCGCa- -3'
miRNA:   3'- uaauaCGCUGuua-CGCGCUUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 11878 0.86 0.250757
Target:  5'- uUUGUGCGGCAgcgcguguuagaguuGUGCGCGAACgGCGGc -3'
miRNA:   3'- uAAUACGCUGU---------------UACGCGCUUGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 11936 0.69 0.974695
Target:  5'- ----cGCGGCGcgccgacuGUGCGCGcGACCgGCGGc -3'
miRNA:   3'- uaauaCGCUGU--------UACGCGC-UUGG-UGCC- -5'
7003 5' -49.7 NC_001875.2 + 12179 0.67 0.990448
Target:  5'- --gAUGCuGAgAAUGCGC-AGCUugGGc -3'
miRNA:   3'- uaaUACG-CUgUUACGCGcUUGGugCC- -5'
7003 5' -49.7 NC_001875.2 + 12706 0.69 0.974695
Target:  5'- uGUUAUggGCGACAaaGUGCGCG-GCCAUc- -3'
miRNA:   3'- -UAAUA--CGCUGU--UACGCGCuUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 14721 0.67 0.992791
Target:  5'- ----aGUGACAAcgaGCGCGAgGCCAUGa -3'
miRNA:   3'- uaauaCGCUGUUa--CGCGCU-UGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 15717 0.69 0.974695
Target:  5'- ---cUGCGGCGagGUGUGCGAggACCccaacGCGGu -3'
miRNA:   3'- uaauACGCUGU--UACGCGCU--UGG-----UGCC- -5'
7003 5' -49.7 NC_001875.2 + 18048 0.69 0.965491
Target:  5'- --aAUGCGAC-AUGCGCG--UgGCGGa -3'
miRNA:   3'- uaaUACGCUGuUACGCGCuuGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 18159 0.69 0.968787
Target:  5'- --gGUGCGGCGc-GCGCGAcgccGCCACu- -3'
miRNA:   3'- uaaUACGCUGUuaCGCGCU----UGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 18425 0.7 0.945338
Target:  5'- ---uUGCGuACucgGCGCGAGgCGCGGu -3'
miRNA:   3'- uaauACGC-UGuuaCGCGCUUgGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 18990 0.69 0.961958
Target:  5'- uUUAUccaCGGCAGUGCGCGcaGGCCGCa- -3'
miRNA:   3'- uAAUAc--GCUGUUACGCGC--UUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 19117 0.73 0.870356
Target:  5'- -cUGUGCGcGCGAcGCGCcuACCACGGc -3'
miRNA:   3'- uaAUACGC-UGUUaCGCGcuUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 20802 0.68 0.979743
Target:  5'- ----cGCG-CAGUGCGCGGGCguCGu -3'
miRNA:   3'- uaauaCGCuGUUACGCGCUUGguGCc -5'
7003 5' -49.7 NC_001875.2 + 21555 0.7 0.940538
Target:  5'- -cUcgGCGACGGggcagcccGCGCGcuCCGCGGc -3'
miRNA:   3'- uaAuaCGCUGUUa-------CGCGCuuGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 21676 0.66 0.994652
Target:  5'- --aGUGCGACGccgcccgacGaGCGCGAcgcgguGCUGCGGu -3'
miRNA:   3'- uaaUACGCUGU---------UaCGCGCU------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 29400 0.67 0.991685
Target:  5'- ----gGCGGCAAggGCGCcAACC-CGGc -3'
miRNA:   3'- uaauaCGCUGUUa-CGCGcUUGGuGCC- -5'
7003 5' -49.7 NC_001875.2 + 31606 0.69 0.974695
Target:  5'- ----aGCGACAAgcagguacGCGaugcucaGAACCACGGc -3'
miRNA:   3'- uaauaCGCUGUUa-------CGCg------CUUGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.