miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 3' -48.1 NC_001875.2 + 131691 0.66 0.999516
Target:  5'- uUGGCGCCGcGu--GCCUgcc-UUGCa -3'
miRNA:   3'- gGCCGCGGCaCuuuUGGAaaacAACG- -5'
7007 3' -48.1 NC_001875.2 + 126503 0.68 0.994532
Target:  5'- cCUGaCGCCGUGAAGACUg-----UGCa -3'
miRNA:   3'- -GGCcGCGGCACUUUUGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 125528 0.66 0.998872
Target:  5'- uUCGGCGCUGcccc-ACCaugcUUGUUGCg -3'
miRNA:   3'- -GGCCGCGGCacuuuUGGaa--AACAACG- -5'
7007 3' -48.1 NC_001875.2 + 125276 0.69 0.990254
Target:  5'- gCUGGCGCUGUcGggGuacACCU--UGUUGa -3'
miRNA:   3'- -GGCCGCGGCA-CuuU---UGGAaaACAACg -5'
7007 3' -48.1 NC_001875.2 + 124348 0.67 0.997561
Target:  5'- aCGGCGCCGaucagccaaaUGAgcggcauGAGCU---UGUUGCu -3'
miRNA:   3'- gGCCGCGGC----------ACU-------UUUGGaaaACAACG- -5'
7007 3' -48.1 NC_001875.2 + 122695 0.72 0.944591
Target:  5'- gCGuGCGCCGUGGAcACCgaacUGgcGCg -3'
miRNA:   3'- gGC-CGCGGCACUUuUGGaaa-ACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 120744 0.69 0.990254
Target:  5'- gCGGCGCCGaGAcgGGGCCg--UGUccaggGCg -3'
miRNA:   3'- gGCCGCGGCaCU--UUUGGaaaACAa----CG- -5'
7007 3' -48.1 NC_001875.2 + 115771 0.75 0.865893
Target:  5'- aCCGGCGCCGUGugcguCCacagcgacgagUGUUGUa -3'
miRNA:   3'- -GGCCGCGGCACuuuu-GGaaa--------ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 111087 1.16 0.00583
Target:  5'- gCCGGCGCCGUGAAAACCUUUUGUUGCg -3'
miRNA:   3'- -GGCCGCGGCACUUUUGGAAAACAACG- -5'
7007 3' -48.1 NC_001875.2 + 110958 0.7 0.987303
Target:  5'- aCGGCGCUGUcucAGCCUUUUGcaGUu -3'
miRNA:   3'- gGCCGCGGCAcuuUUGGAAAACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 108642 0.69 0.988854
Target:  5'- gCGGUGCC-UGAuuACCU--UGUUGg -3'
miRNA:   3'- gGCCGCGGcACUuuUGGAaaACAACg -5'
7007 3' -48.1 NC_001875.2 + 105263 0.67 0.998626
Target:  5'- -gGGCGCCGUGcAAACgCUcaaucugUGCa -3'
miRNA:   3'- ggCCGCGGCACuUUUG-GAaaaca--ACG- -5'
7007 3' -48.1 NC_001875.2 + 103455 0.66 0.999236
Target:  5'- gCGGCGUCGUGcAcgccgcgacguacGACCUUUUaaagGCg -3'
miRNA:   3'- gGCCGCGGCACuU-------------UUGGAAAAcaa-CG- -5'
7007 3' -48.1 NC_001875.2 + 102958 0.72 0.944591
Target:  5'- cUCGGCGCCGaaAAGACCgugugcUUUGUgcccUGCg -3'
miRNA:   3'- -GGCCGCGGCacUUUUGGa-----AAACA----ACG- -5'
7007 3' -48.1 NC_001875.2 + 101196 0.67 0.998599
Target:  5'- gCCGGCGCCcaacuugccguuuGUcGAcgGCUUUg-GUUGCg -3'
miRNA:   3'- -GGCCGCGG-------------CA-CUuuUGGAAaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 100008 0.69 0.992638
Target:  5'- gCGGUGCUGgucGcAAACCUggugcacUGUUGCg -3'
miRNA:   3'- gGCCGCGGCa--CuUUUGGAaa-----ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 98886 0.69 0.993641
Target:  5'- gCgGGCGCCGUuucGGGAAUCgaUUGgcGCc -3'
miRNA:   3'- -GgCCGCGGCA---CUUUUGGaaAACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 98033 0.68 0.996012
Target:  5'- cCCGcGCGCCGUGc--GCCgacgGgcaagUGCg -3'
miRNA:   3'- -GGC-CGCGGCACuuuUGGaaaaCa----ACG- -5'
7007 3' -48.1 NC_001875.2 + 97605 0.66 0.999397
Target:  5'- aCGcGUGCCGUGAGGGgCUggccaaUUGCc -3'
miRNA:   3'- gGC-CGCGGCACUUUUgGAaaac--AACG- -5'
7007 3' -48.1 NC_001875.2 + 92084 0.71 0.972573
Target:  5'- uCCaGGCGCgCGUGggGuuggccaccuuuuccGCCUUUUgcgcaaacacgGUUGCa -3'
miRNA:   3'- -GG-CCGCG-GCACuuU---------------UGGAAAA-----------CAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.