miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 3' -50.2 NC_001875.2 + 111949 1.06 0.010069
Target:  5'- gCAGCUAAAAGCGCACGCGUUUCGCAAa -3'
miRNA:   3'- -GUCGAUUUUCGCGUGCGCAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 32899 0.77 0.579766
Target:  5'- aCGGCUGAAcaCGCGCGCGUcgCGCAc -3'
miRNA:   3'- -GUCGAUUUucGCGUGCGCAaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 21252 0.76 0.64552
Target:  5'- aAGCUGGuccAGGCGCGCGCGcggCGCGg -3'
miRNA:   3'- gUCGAUU---UUCGCGUGCGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 1038 0.76 0.64552
Target:  5'- gGGCccGAGGCGCACaGCGUUgggCGCAAc -3'
miRNA:   3'- gUCGauUUUCGCGUG-CGCAAa--GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 102429 0.75 0.656493
Target:  5'- gCGGCgacGAGGUGCgcuGCGCGUUUUGCAAg -3'
miRNA:   3'- -GUCGau-UUUCGCG---UGCGCAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 81911 0.75 0.667444
Target:  5'- cCAGCUGAuuAGCGCGCGCGgcUC-CGAc -3'
miRNA:   3'- -GUCGAUUu-UCGCGUGCGCaaAGcGUU- -5'
7008 3' -50.2 NC_001875.2 + 94462 0.75 0.678361
Target:  5'- gCAGCgGAAacugcagcGGCGCGCGCG-UUCGCAc -3'
miRNA:   3'- -GUCGaUUU--------UCGCGUGCGCaAAGCGUu -5'
7008 3' -50.2 NC_001875.2 + 9631 0.74 0.709735
Target:  5'- aAGCUGcguGCGCGCGCcgugcguGUUUCGCGAg -3'
miRNA:   3'- gUCGAUuuuCGCGUGCG-------CAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 34215 0.73 0.76319
Target:  5'- -cGCguuuucuGCGCACGUGUUUUGCAAa -3'
miRNA:   3'- guCGauuuu--CGCGUGCGCAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 47107 0.73 0.802755
Target:  5'- -cGCUGGAAGCGCGgGCGcaacCGCGAc -3'
miRNA:   3'- guCGAUUUUCGCGUgCGCaaa-GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 43758 0.73 0.802755
Target:  5'- uGGCUGcu-GCGCGgGCGUUUgCGCAGa -3'
miRNA:   3'- gUCGAUuuuCGCGUgCGCAAA-GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 35380 0.72 0.830598
Target:  5'- gCAGCUGGAGGCGCugcuguccgugGCGCG---CGCGAg -3'
miRNA:   3'- -GUCGAUUUUCGCG-----------UGCGCaaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 110692 0.72 0.839476
Target:  5'- gCGGCcgcgGAGGGCGC-CGCGUucguggcuUUCGCAAc -3'
miRNA:   3'- -GUCGa---UUUUCGCGuGCGCA--------AAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 18433 0.72 0.839476
Target:  5'- uCGGCgcGAGGCGCGgucCGCGUggcgCGCGAa -3'
miRNA:   3'- -GUCGauUUUCGCGU---GCGCAaa--GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 14550 0.72 0.848137
Target:  5'- gAGCU---GGCGCACGCGgccaUCGUGAa -3'
miRNA:   3'- gUCGAuuuUCGCGUGCGCaa--AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 126993 0.72 0.848137
Target:  5'- gAGCU----GUGCACGCGUUcCGCAAc -3'
miRNA:   3'- gUCGAuuuuCGCGUGCGCAAaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 34104 0.71 0.872732
Target:  5'- gGGUUGcacGAGCGCGCGCGc-UCGCGGu -3'
miRNA:   3'- gUCGAUu--UUCGCGUGCGCaaAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 43812 0.71 0.872732
Target:  5'- uGGCUGcu-GCGCGgGCGUUUgCGCGGg -3'
miRNA:   3'- gUCGAUuuuCGCGUgCGCAAA-GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 8852 0.71 0.872732
Target:  5'- uCAGCU---GGCGCACGUGUUgccggucaaagUUGCAGc -3'
miRNA:   3'- -GUCGAuuuUCGCGUGCGCAA-----------AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 100879 0.71 0.872732
Target:  5'- aGGCgc--AGCGCGCGCGUgggCGCc- -3'
miRNA:   3'- gUCGauuuUCGCGUGCGCAaa-GCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.