miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 3' -50.2 NC_001875.2 + 58815 0.68 0.952144
Target:  5'- cCAGCUGcacgcgGAAaUGCGCGCGUUgCGCAc -3'
miRNA:   3'- -GUCGAU------UUUcGCGUGCGCAAaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 33941 0.7 0.902028
Target:  5'- cCAGCUu---GCGC-CGCGUUUCgGCGu -3'
miRNA:   3'- -GUCGAuuuuCGCGuGCGCAAAG-CGUu -5'
7008 3' -50.2 NC_001875.2 + 88133 0.7 0.908691
Target:  5'- aCAGUUGggaAAGGCGCGuCGCGUcaaugUUUGCGAa -3'
miRNA:   3'- -GUCGAU---UUUCGCGU-GCGCA-----AAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 105610 0.7 0.915083
Target:  5'- gCAGCgccAAGAGCgguuGCACGUGUggugCGCAAa -3'
miRNA:   3'- -GUCGa--UUUUCG----CGUGCGCAaa--GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 110191 0.69 0.937902
Target:  5'- -cGCUcguccGCGCugGCGUUUgGCAAc -3'
miRNA:   3'- guCGAuuuu-CGCGugCGCAAAgCGUU- -5'
7008 3' -50.2 NC_001875.2 + 66025 0.69 0.94292
Target:  5'- gCAGCUGcAAGCGcUugGCGccgCGCAGg -3'
miRNA:   3'- -GUCGAUuUUCGC-GugCGCaaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 33352 0.69 0.94292
Target:  5'- gCAGCcAAucaCGCACGCGgcagUCGCAAa -3'
miRNA:   3'- -GUCGaUUuucGCGUGCGCaa--AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 87042 0.69 0.947666
Target:  5'- -cGCUucAAAGCGCACGUGUUcaaaGCGGu -3'
miRNA:   3'- guCGAu-UUUCGCGUGCGCAAag--CGUU- -5'
7008 3' -50.2 NC_001875.2 + 129534 0.69 0.947666
Target:  5'- gAGCUGGccGAGCuGCGCGCGgccacggCGCGc -3'
miRNA:   3'- gUCGAUU--UUCG-CGUGCGCaaa----GCGUu -5'
7008 3' -50.2 NC_001875.2 + 130367 0.7 0.899287
Target:  5'- -cGCUAAAAGUaGCACGCGccuuucgagagcgUUCGCAc -3'
miRNA:   3'- guCGAUUUUCG-CGUGCGCa------------AAGCGUu -5'
7008 3' -50.2 NC_001875.2 + 99261 0.71 0.8879
Target:  5'- aCGGCUAgucGAGGUGCGCGCGgcacugcUGCAGc -3'
miRNA:   3'- -GUCGAU---UUUCGCGUGCGCaaa----GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 97728 0.71 0.880443
Target:  5'- -cGCUAGaccgcGAGCGCGCGCGcucgUGCAAc -3'
miRNA:   3'- guCGAUU-----UUCGCGUGCGCaaa-GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 32899 0.77 0.579766
Target:  5'- aCGGCUGAAcaCGCGCGCGUcgCGCAc -3'
miRNA:   3'- -GUCGAUUUucGCGUGCGCAaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 21252 0.76 0.64552
Target:  5'- aAGCUGGuccAGGCGCGCGCGcggCGCGg -3'
miRNA:   3'- gUCGAUU---UUCGCGUGCGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 1038 0.76 0.64552
Target:  5'- gGGCccGAGGCGCACaGCGUUgggCGCAAc -3'
miRNA:   3'- gUCGauUUUCGCGUG-CGCAAa--GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 34215 0.73 0.76319
Target:  5'- -cGCguuuucuGCGCACGUGUUUUGCAAa -3'
miRNA:   3'- guCGauuuu--CGCGUGCGCAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 47107 0.73 0.802755
Target:  5'- -cGCUGGAAGCGCGgGCGcaacCGCGAc -3'
miRNA:   3'- guCGAUUUUCGCGUgCGCaaa-GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 35380 0.72 0.830598
Target:  5'- gCAGCUGGAGGCGCugcuguccgugGCGCG---CGCGAg -3'
miRNA:   3'- -GUCGAUUUUCGCG-----------UGCGCaaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 110692 0.72 0.839476
Target:  5'- gCGGCcgcgGAGGGCGC-CGCGUucguggcuUUCGCAAc -3'
miRNA:   3'- -GUCGa---UUUUCGCGuGCGCA--------AAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 8852 0.71 0.872732
Target:  5'- uCAGCU---GGCGCACGUGUUgccggucaaagUUGCAGc -3'
miRNA:   3'- -GUCGAuuuUCGCGUGCGCAA-----------AGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.