miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 3' -50.2 NC_001875.2 + 773 0.68 0.96031
Target:  5'- gCAGCUGAcGGCgGCGCGCGgaaCGUu- -3'
miRNA:   3'- -GUCGAUUuUCG-CGUGCGCaaaGCGuu -5'
7008 3' -50.2 NC_001875.2 + 1038 0.76 0.64552
Target:  5'- gGGCccGAGGCGCACaGCGUUgggCGCAAc -3'
miRNA:   3'- gUCGauUUUCGCGUG-CGCAAa--GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 3050 0.69 0.937902
Target:  5'- gCAGCgcguaAGAGGCGCGCaGCGg--CGCGc -3'
miRNA:   3'- -GUCGa----UUUUCGCGUG-CGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 5502 0.68 0.964009
Target:  5'- aCAGCacGAccGGCGCACGCG---CGCAGu -3'
miRNA:   3'- -GUCGauUU--UCGCGUGCGCaaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 8852 0.71 0.872732
Target:  5'- uCAGCU---GGCGCACGUGUUgccggucaaagUUGCAGc -3'
miRNA:   3'- -GUCGAuuuUCGCGUGCGCAA-----------AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 9631 0.74 0.709735
Target:  5'- aAGCUGcguGCGCGCGCcgugcguGUUUCGCGAg -3'
miRNA:   3'- gUCGAUuuuCGCGUGCG-------CAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 14550 0.72 0.848137
Target:  5'- gAGCU---GGCGCACGCGgccaUCGUGAa -3'
miRNA:   3'- gUCGAuuuUCGCGUGCGCaa--AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 18433 0.72 0.839476
Target:  5'- uCGGCgcGAGGCGCGgucCGCGUggcgCGCGAa -3'
miRNA:   3'- -GUCGauUUUCGCGU---GCGCAaa--GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 18754 0.7 0.915083
Target:  5'- gCGGCU-AAGGCGCugACGCGcgUCGCc- -3'
miRNA:   3'- -GUCGAuUUUCGCG--UGCGCaaAGCGuu -5'
7008 3' -50.2 NC_001875.2 + 21252 0.76 0.64552
Target:  5'- aAGCUGGuccAGGCGCGCGCGcggCGCGg -3'
miRNA:   3'- gUCGAUU---UUCGCGUGCGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 21395 0.66 0.983387
Target:  5'- cCAGCUccAAGCGCAuuugguccacCGUGgugUCGCGGu -3'
miRNA:   3'- -GUCGAuuUUCGCGU----------GCGCaa-AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 22207 0.66 0.987091
Target:  5'- -cGCguuGGGCa-GCGCGUUUCGCAu -3'
miRNA:   3'- guCGauuUUCGcgUGCGCAAAGCGUu -5'
7008 3' -50.2 NC_001875.2 + 28510 0.69 0.947666
Target:  5'- uGGCUAgccGucGCGCACGCG--UCGCc- -3'
miRNA:   3'- gUCGAU---UuuCGCGUGCGCaaAGCGuu -5'
7008 3' -50.2 NC_001875.2 + 29796 0.66 0.985328
Target:  5'- gGGaCUGugcGGGCGCugGCGg--CGCAu -3'
miRNA:   3'- gUC-GAUu--UUCGCGugCGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 30452 0.68 0.96746
Target:  5'- gCAGCUGGc-GCGCguuGCGCGcgUUUGCAAc -3'
miRNA:   3'- -GUCGAUUuuCGCG---UGCGCa-AAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 31074 0.66 0.990124
Target:  5'- cCGGauuuuuGGGCGUACGUGUcgCGCAAu -3'
miRNA:   3'- -GUCgauu--UUCGCGUGCGCAaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 31821 0.66 0.987091
Target:  5'- gCGGC---AAGCGC-CGCGUUUgCGCu- -3'
miRNA:   3'- -GUCGauuUUCGCGuGCGCAAA-GCGuu -5'
7008 3' -50.2 NC_001875.2 + 32899 0.77 0.579766
Target:  5'- aCGGCUGAAcaCGCGCGCGUcgCGCAc -3'
miRNA:   3'- -GUCGAUUUucGCGUGCGCAaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 33352 0.69 0.94292
Target:  5'- gCAGCcAAucaCGCACGCGgcagUCGCAAa -3'
miRNA:   3'- -GUCGaUUuucGCGUGCGCaa--AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 33941 0.7 0.902028
Target:  5'- cCAGCUu---GCGC-CGCGUUUCgGCGu -3'
miRNA:   3'- -GUCGAuuuuCGCGuGCGCAAAG-CGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.