miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 5' -56.8 NC_001875.2 + 113199 1.06 0.002751
Target:  5'- cUGCGACGUGCCCACCAGCAUGCGUUUg -3'
miRNA:   3'- -ACGCUGCACGGGUGGUCGUACGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 115756 0.74 0.385504
Target:  5'- aGCGGCGUGCgCCaaACCGGCgccguGUGCGUc- -3'
miRNA:   3'- aCGCUGCACG-GG--UGGUCG-----UACGCAaa -5'
7009 5' -56.8 NC_001875.2 + 111110 0.73 0.420509
Target:  5'- uUGCGGCGUGCaCGgCAGCAaUGCGUc- -3'
miRNA:   3'- -ACGCUGCACGgGUgGUCGU-ACGCAaa -5'
7009 5' -56.8 NC_001875.2 + 95431 0.73 0.420509
Target:  5'- cGCGGC--GCCgGCCAGCGUGCGc-- -3'
miRNA:   3'- aCGCUGcaCGGgUGGUCGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 110292 0.72 0.46685
Target:  5'- cGCG-CG-GCCCGCgguaAGCGUGCGUUUu -3'
miRNA:   3'- aCGCuGCaCGGGUGg---UCGUACGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 117317 0.72 0.486114
Target:  5'- aGCGGCGUGCCCGCCAaGUucccccgacaGCGg-- -3'
miRNA:   3'- aCGCUGCACGGGUGGU-CGua--------CGCaaa -5'
7009 5' -56.8 NC_001875.2 + 52352 0.71 0.525713
Target:  5'- gUGCGgcGCGUGCCgCGCCAGCGUccaagaGCGc-- -3'
miRNA:   3'- -ACGC--UGCACGG-GUGGUCGUA------CGCaaa -5'
7009 5' -56.8 NC_001875.2 + 51958 0.71 0.545969
Target:  5'- cGCGACGUGCCgCACgC-GCGcGCGUg- -3'
miRNA:   3'- aCGCUGCACGG-GUG-GuCGUaCGCAaa -5'
7009 5' -56.8 NC_001875.2 + 128008 0.7 0.556191
Target:  5'- gGCuGCG-GCCgCGCCGGCGUGCGc-- -3'
miRNA:   3'- aCGcUGCaCGG-GUGGUCGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 101998 0.7 0.570593
Target:  5'- uUGCGGCGUGCgcggcggcgguggaCugCAGCGUGcCGUUg -3'
miRNA:   3'- -ACGCUGCACGg-------------GugGUCGUAC-GCAAa -5'
7009 5' -56.8 NC_001875.2 + 88927 0.7 0.576793
Target:  5'- cUGCGAC--GCCCA-CGGCAUGCGg-- -3'
miRNA:   3'- -ACGCUGcaCGGGUgGUCGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 26252 0.7 0.591316
Target:  5'- cUGCGGCGUGUCCACCGccaagauguacacgcGCcuugaGUGCGa-- -3'
miRNA:   3'- -ACGCUGCACGGGUGGU---------------CG-----UACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 101784 0.7 0.595477
Target:  5'- gGCGACGUGCaaagGCCGGCAagcaauuggccgGCGUUUa -3'
miRNA:   3'- aCGCUGCACGgg--UGGUCGUa-----------CGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 38571 0.7 0.601728
Target:  5'- cGCGGCGUGCCCauccugcucuacacgGgCCAGC-UGCGc-- -3'
miRNA:   3'- aCGCUGCACGGG---------------U-GGUCGuACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 80302 0.7 0.607987
Target:  5'- cGuCGGCGUGUUCGCCAGCgcuaauGUGCGc-- -3'
miRNA:   3'- aC-GCUGCACGGGUGGUCG------UACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 37615 0.7 0.607987
Target:  5'- gGCGGCGUGCUCGCCGacGaCAUGgGg-- -3'
miRNA:   3'- aCGCUGCACGGGUGGU--C-GUACgCaaa -5'
7009 5' -56.8 NC_001875.2 + 96053 0.69 0.618432
Target:  5'- aGCG-CGUGCgCACCGGCAcGCa--- -3'
miRNA:   3'- aCGCuGCACGgGUGGUCGUaCGcaaa -5'
7009 5' -56.8 NC_001875.2 + 92724 0.69 0.639348
Target:  5'- aGCG-CGcUGCCCGCCAGCuaaccgGUGCa--- -3'
miRNA:   3'- aCGCuGC-ACGGGUGGUCG------UACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 27605 0.69 0.649801
Target:  5'- cGaCGGCGUaGCCCACCAacaGCAccGCGUg- -3'
miRNA:   3'- aC-GCUGCA-CGGGUGGU---CGUa-CGCAaa -5'
7009 5' -56.8 NC_001875.2 + 9863 0.69 0.656067
Target:  5'- gGCaACGUGCCCGCCAGCuuuuugaauacgcUGCa--- -3'
miRNA:   3'- aCGcUGCACGGGUGGUCGu------------ACGcaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.