miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 5' -56.8 NC_001875.2 + 4525 0.67 0.742111
Target:  5'- aGCGGCGca-CCGCCGGC-UGCGg-- -3'
miRNA:   3'- aCGCUGCacgGGUGGUCGuACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 5847 0.67 0.742111
Target:  5'- cGCGcccGCGUaGCagugCACCAGCAcGCGUUUg -3'
miRNA:   3'- aCGC---UGCA-CGg---GUGGUCGUaCGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 7069 0.66 0.8263
Target:  5'- cUGCGGCGacgCCACCGGCcuGUGCGc-- -3'
miRNA:   3'- -ACGCUGCacgGGUGGUCG--UACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 9863 0.69 0.656067
Target:  5'- gGCaACGUGCCCGCCAGCuuuuugaauacgcUGCa--- -3'
miRNA:   3'- aCGcUGCACGGGUGGUCGu------------ACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 14412 0.66 0.817564
Target:  5'- aGCGuAUGgGCgCCACCGGCAUGgGc-- -3'
miRNA:   3'- aCGC-UGCaCG-GGUGGUCGUACgCaaa -5'
7009 5' -56.8 NC_001875.2 + 15103 0.66 0.834851
Target:  5'- gGCGGgGUuuuUCUACCAGUAUGUGUUUc -3'
miRNA:   3'- aCGCUgCAc--GGGUGGUCGUACGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 17979 0.69 0.670655
Target:  5'- gGaCGACGUGCCCGCguuCAaCGUGCGg-- -3'
miRNA:   3'- aC-GCUGCACGGGUG---GUcGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 18183 0.68 0.72205
Target:  5'- cUGUGGCgGUGCCgGCgGGCGUagGCGUg- -3'
miRNA:   3'- -ACGCUG-CACGGgUGgUCGUA--CGCAaa -5'
7009 5' -56.8 NC_001875.2 + 18690 0.67 0.742111
Target:  5'- -aCGGCGcGCgCGCCGGCGUGCa--- -3'
miRNA:   3'- acGCUGCaCGgGUGGUCGUACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 19124 0.68 0.711893
Target:  5'- cGCGACGcGCCUACCAcgGCG-GCGc-- -3'
miRNA:   3'- aCGCUGCaCGGGUGGU--CGUaCGCaaa -5'
7009 5' -56.8 NC_001875.2 + 21020 0.66 0.808653
Target:  5'- cGCGGCGcaccagcgcGUCCACCuGCGcgGCGUUg -3'
miRNA:   3'- aCGCUGCa--------CGGGUGGuCGUa-CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 21199 0.68 0.701666
Target:  5'- cGCGgcACGgccaGCgCCACCAGguUGUGUUUa -3'
miRNA:   3'- aCGC--UGCa---CG-GGUGGUCguACGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 26252 0.7 0.591316
Target:  5'- cUGCGGCGUGUCCACCGccaagauguacacgcGCcuugaGUGCGa-- -3'
miRNA:   3'- -ACGCUGCACGGGUGGU---------------CG-----UACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 26322 0.67 0.771426
Target:  5'- cGCGACGaGCCguguCGCCAaGCAgUGUGUUUa -3'
miRNA:   3'- aCGCUGCaCGG----GUGGU-CGU-ACGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 27605 0.69 0.649801
Target:  5'- cGaCGGCGUaGCCCACCAacaGCAccGCGUg- -3'
miRNA:   3'- aC-GCUGCA-CGGGUGGU---CGUa-CGCAaa -5'
7009 5' -56.8 NC_001875.2 + 32786 0.67 0.771426
Target:  5'- cGCGGCGUgggcgggcGCCgCGCCGGCAagcucgGCGa-- -3'
miRNA:   3'- aCGCUGCA--------CGG-GUGGUCGUa-----CGCaaa -5'
7009 5' -56.8 NC_001875.2 + 33039 0.66 0.799574
Target:  5'- cGCGGCGggcGCCgCGCCGcGCGgauaGCGUUc -3'
miRNA:   3'- aCGCUGCa--CGG-GUGGU-CGUa---CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 33860 0.68 0.681037
Target:  5'- cGCGcacCGUGCgCgGCCGGCAgaacgGCGUUUc -3'
miRNA:   3'- aCGCu--GCACG-GgUGGUCGUa----CGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 33971 0.67 0.761771
Target:  5'- gUGCGGCGcgcaGCCgACCGGCAcguUGCa--- -3'
miRNA:   3'- -ACGCUGCa---CGGgUGGUCGU---ACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 37118 0.67 0.751996
Target:  5'- cGCGGC--GCCgCGCCGGCGuuUGCGUc- -3'
miRNA:   3'- aCGCUGcaCGG-GUGGUCGU--ACGCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.