miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 5' -56.8 NC_001875.2 + 18690 0.67 0.742111
Target:  5'- -aCGGCGcGCgCGCCGGCGUGCa--- -3'
miRNA:   3'- acGCUGCaCGgGUGGUCGUACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 19124 0.68 0.711893
Target:  5'- cGCGACGcGCCUACCAcgGCG-GCGc-- -3'
miRNA:   3'- aCGCUGCaCGGGUGGU--CGUaCGCaaa -5'
7009 5' -56.8 NC_001875.2 + 18183 0.68 0.72205
Target:  5'- cUGUGGCgGUGCCgGCgGGCGUagGCGUg- -3'
miRNA:   3'- -ACGCUG-CACGGgUGgUCGUA--CGCAaa -5'
7009 5' -56.8 NC_001875.2 + 42867 0.67 0.732126
Target:  5'- cGCaGGCGcagGUCCGCCAGCGcaacGCGUUc -3'
miRNA:   3'- aCG-CUGCa--CGGGUGGUCGUa---CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 5847 0.67 0.742111
Target:  5'- cGCGcccGCGUaGCagugCACCAGCAcGCGUUUg -3'
miRNA:   3'- aCGC---UGCA-CGg---GUGGUCGUaCGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 4525 0.67 0.742111
Target:  5'- aGCGGCGca-CCGCCGGC-UGCGg-- -3'
miRNA:   3'- aCGCUGCacgGGUGGUCGuACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 43313 0.67 0.742111
Target:  5'- aGCGGCGcGCgCGCgGGUcgGCGUg- -3'
miRNA:   3'- aCGCUGCaCGgGUGgUCGuaCGCAaa -5'
7009 5' -56.8 NC_001875.2 + 44010 0.67 0.742111
Target:  5'- gGCGccgugcccaGCGUGCUguaccgcagCACCGGCAUcGCGUUUu -3'
miRNA:   3'- aCGC---------UGCACGG---------GUGGUCGUA-CGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 90501 0.67 0.742111
Target:  5'- cUGCGcGCG-GCCCACUuGCAcgGCGUa- -3'
miRNA:   3'- -ACGC-UGCaCGGGUGGuCGUa-CGCAaa -5'
7009 5' -56.8 NC_001875.2 + 118635 0.68 0.711893
Target:  5'- aGCcACGUGCCgGCCgaGGCAaagGCGUUc -3'
miRNA:   3'- aCGcUGCACGGgUGG--UCGUa--CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 98805 0.68 0.701666
Target:  5'- cGCGGCGcggcGCCCGCCGcGC-UGCGc-- -3'
miRNA:   3'- aCGCUGCa---CGGGUGGU-CGuACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 41428 0.68 0.701666
Target:  5'- --aGugGUGCCCAUgAGCGUgauaaacaacGCGUUUa -3'
miRNA:   3'- acgCugCACGGGUGgUCGUA----------CGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 115756 0.74 0.385504
Target:  5'- aGCGGCGUGCgCCaaACCGGCgccguGUGCGUc- -3'
miRNA:   3'- aCGCUGCACG-GG--UGGUCG-----UACGCAaa -5'
7009 5' -56.8 NC_001875.2 + 111110 0.73 0.420509
Target:  5'- uUGCGGCGUGCaCGgCAGCAaUGCGUc- -3'
miRNA:   3'- -ACGCUGCACGgGUgGUCGU-ACGCAaa -5'
7009 5' -56.8 NC_001875.2 + 51958 0.71 0.545969
Target:  5'- cGCGACGUGCCgCACgC-GCGcGCGUg- -3'
miRNA:   3'- aCGCUGCACGG-GUG-GuCGUaCGCAaa -5'
7009 5' -56.8 NC_001875.2 + 38571 0.7 0.601728
Target:  5'- cGCGGCGUGCCCauccugcucuacacgGgCCAGC-UGCGc-- -3'
miRNA:   3'- aCGCUGCACGGG---------------U-GGUCGuACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 37615 0.7 0.607987
Target:  5'- gGCGGCGUGCUCGCCGacGaCAUGgGg-- -3'
miRNA:   3'- aCGCUGCACGGGUGGU--C-GUACgCaaa -5'
7009 5' -56.8 NC_001875.2 + 92724 0.69 0.639348
Target:  5'- aGCG-CGcUGCCCGCCAGCuaaccgGUGCa--- -3'
miRNA:   3'- aCGCuGC-ACGGGUGGUCG------UACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 115178 0.69 0.66024
Target:  5'- --aGACGUGCCCgACC-GCGUGCa--- -3'
miRNA:   3'- acgCUGCACGGG-UGGuCGUACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 43549 0.69 0.669615
Target:  5'- gUGCGgacaaucaccGCGUcGCCCGCCAGCGUcaugcugGCGg-- -3'
miRNA:   3'- -ACGC----------UGCA-CGGGUGGUCGUA-------CGCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.