miRNA display CGI


Results 21 - 40 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 3' -54 NC_001875.2 + 66776 0.7 0.742481
Target:  5'- cCCAGCGuguUG-GC-GCCGCCGUUGu -3'
miRNA:   3'- -GGUCGCuuuGCuCGuCGGCGGCAAUu -5'
7011 3' -54 NC_001875.2 + 89963 0.7 0.751449
Target:  5'- gCGGCGAcagguguugGACGAGCAguuguugcagcucGCCGCCGc--- -3'
miRNA:   3'- gGUCGCU---------UUGCUCGU-------------CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 40226 0.7 0.75244
Target:  5'- gCCGGCGAAACGcGCguguuuAGCgUGCUGUUGAc -3'
miRNA:   3'- -GGUCGCUUUGCuCG------UCG-GCGGCAAUU- -5'
7011 3' -54 NC_001875.2 + 48856 0.7 0.75244
Target:  5'- gCCGGCGA--CGAGCGGC-GCCGc--- -3'
miRNA:   3'- -GGUCGCUuuGCUCGUCGgCGGCaauu -5'
7011 3' -54 NC_001875.2 + 88236 0.7 0.762288
Target:  5'- aCGGCGcAAGCGGcGCGcGCCGCCGc--- -3'
miRNA:   3'- gGUCGC-UUUGCU-CGU-CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 34817 0.7 0.762288
Target:  5'- -aAGCGuuuACGAcGCuGCCGCCGUUu- -3'
miRNA:   3'- ggUCGCuu-UGCU-CGuCGGCGGCAAuu -5'
7011 3' -54 NC_001875.2 + 63096 0.7 0.762288
Target:  5'- aCCAGCGuguCGAGCAaCCGCuCGUc-- -3'
miRNA:   3'- -GGUCGCuuuGCUCGUcGGCG-GCAauu -5'
7011 3' -54 NC_001875.2 + 113839 0.7 0.772012
Target:  5'- aCAGCGGGuCGGGgucgGGCCGCaCGUUGAa -3'
miRNA:   3'- gGUCGCUUuGCUCg---UCGGCG-GCAAUU- -5'
7011 3' -54 NC_001875.2 + 17562 0.7 0.772012
Target:  5'- aCCGuUGgcGCGAGCGGCUGCCGc--- -3'
miRNA:   3'- -GGUcGCuuUGCUCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 99667 0.7 0.780651
Target:  5'- -uGGCGGAGagcaaguuccaguUGAGCAgcgcgucuucGCCGCCGUUGAg -3'
miRNA:   3'- ggUCGCUUU-------------GCUCGU----------CGGCGGCAAUU- -5'
7011 3' -54 NC_001875.2 + 119450 0.7 0.781604
Target:  5'- aCAGCGGcccgacGACGAGCGGCa-CCGUg-- -3'
miRNA:   3'- gGUCGCU------UUGCUCGUCGgcGGCAauu -5'
7011 3' -54 NC_001875.2 + 117347 0.7 0.781604
Target:  5'- gCgGGCGAAccgGCGGGCcggcuGGCCGUCGggGAg -3'
miRNA:   3'- -GgUCGCUU---UGCUCG-----UCGGCGGCaaUU- -5'
7011 3' -54 NC_001875.2 + 81803 0.7 0.791054
Target:  5'- aCAGCGA--CGGGcCGGCCGCCu---- -3'
miRNA:   3'- gGUCGCUuuGCUC-GUCGGCGGcaauu -5'
7011 3' -54 NC_001875.2 + 41045 0.7 0.791054
Target:  5'- aCGGCGuuuuuACGAGCGGCguggucgugcaCGCCGUa-- -3'
miRNA:   3'- gGUCGCuu---UGCUCGUCG-----------GCGGCAauu -5'
7011 3' -54 NC_001875.2 + 2711 0.69 0.800352
Target:  5'- uUCGGCGuGAAUguucaugauaGGGCAGCCGCCGc--- -3'
miRNA:   3'- -GGUCGC-UUUG----------CUCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 70253 0.69 0.800352
Target:  5'- gCCGGCGcc-CGAGCcGUCGCCGcUAAu -3'
miRNA:   3'- -GGUCGCuuuGCUCGuCGGCGGCaAUU- -5'
7011 3' -54 NC_001875.2 + 34899 0.69 0.800352
Target:  5'- uCCGGUGAAAUu-GUGGCCGCCGc--- -3'
miRNA:   3'- -GGUCGCUUUGcuCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 73799 0.69 0.800352
Target:  5'- gCGGCuGGAACG-GCAGCgCGCCGc--- -3'
miRNA:   3'- gGUCG-CUUUGCuCGUCG-GCGGCaauu -5'
7011 3' -54 NC_001875.2 + 23175 0.69 0.800352
Target:  5'- aCGGCGGcuGCGGGCA-CgGCCGUUGg -3'
miRNA:   3'- gGUCGCUu-UGCUCGUcGgCGGCAAUu -5'
7011 3' -54 NC_001875.2 + 66121 0.69 0.809488
Target:  5'- gCGGCGAGGCG-GC-GCCGCCc---- -3'
miRNA:   3'- gGUCGCUUUGCuCGuCGGCGGcaauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.