miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 3' -54.4 NC_001875.2 + 50933 0.66 0.946376
Target:  5'- cGCCCGuCAa-GUUGUUCGugAACGGc- -3'
miRNA:   3'- -UGGGC-GUgcUAACAGGCugUUGCCuc -5'
7014 3' -54.4 NC_001875.2 + 40153 0.66 0.946376
Target:  5'- gGCaCCGCACGg----CCGGCAACGcGAu -3'
miRNA:   3'- -UG-GGCGUGCuaacaGGCUGUUGC-CUc -5'
7014 3' -54.4 NC_001875.2 + 108017 0.66 0.945933
Target:  5'- cACCCGCcagagacACGGcgcGcCCGACGccGCGGAGc -3'
miRNA:   3'- -UGGGCG-------UGCUaa-CaGGCUGU--UGCCUC- -5'
7014 3' -54.4 NC_001875.2 + 95944 0.66 0.932029
Target:  5'- aACCCGCugGAg---CUGGCAACGc-- -3'
miRNA:   3'- -UGGGCGugCUaacaGGCUGUUGCcuc -5'
7014 3' -54.4 NC_001875.2 + 73888 0.66 0.932029
Target:  5'- -aCUGCACGAUUagcgCCGGCAuggcguCGGGGu -3'
miRNA:   3'- ugGGCGUGCUAAca--GGCUGUu-----GCCUC- -5'
7014 3' -54.4 NC_001875.2 + 128696 0.66 0.932029
Target:  5'- cGCCCGaCGCcgc-GUCCGcGCAGCGGGc -3'
miRNA:   3'- -UGGGC-GUGcuaaCAGGC-UGUUGCCUc -5'
7014 3' -54.4 NC_001875.2 + 2948 0.67 0.921243
Target:  5'- cGCUgGCGCGcUUGcUCGGCAGCGGuGu -3'
miRNA:   3'- -UGGgCGUGCuAACaGGCUGUUGCCuC- -5'
7014 3' -54.4 NC_001875.2 + 38057 0.67 0.915482
Target:  5'- cGCCCGCGCGAcUUGcgCCGuaAACGGc- -3'
miRNA:   3'- -UGGGCGUGCU-AACa-GGCugUUGCCuc -5'
7014 3' -54.4 NC_001875.2 + 56983 0.67 0.908864
Target:  5'- aAUCCGCcacgACGGUUuugccgagcagcgGUCCGuCAAUGGAGu -3'
miRNA:   3'- -UGGGCG----UGCUAA-------------CAGGCuGUUGCCUC- -5'
7014 3' -54.4 NC_001875.2 + 117324 0.67 0.903232
Target:  5'- uGCCCGCcaaGuucccCCGACAGCGGAa -3'
miRNA:   3'- -UGGGCGug-CuaacaGGCUGUUGCCUc -5'
7014 3' -54.4 NC_001875.2 + 42899 0.67 0.903232
Target:  5'- uCCCGC-CGAUUGUCCGuuuCAGacUGGuGu -3'
miRNA:   3'- uGGGCGuGCUAACAGGCu--GUU--GCCuC- -5'
7014 3' -54.4 NC_001875.2 + 39651 0.67 0.903232
Target:  5'- aACCgCGCGCGAguUUGggCCGGCGGCGc-- -3'
miRNA:   3'- -UGG-GCGUGCU--AACa-GGCUGUUGCcuc -5'
7014 3' -54.4 NC_001875.2 + 54135 0.67 0.903232
Target:  5'- gGCCCGguCGGUacggcaCCGAC-ACGGGGa -3'
miRNA:   3'- -UGGGCguGCUAaca---GGCUGuUGCCUC- -5'
7014 3' -54.4 NC_001875.2 + 31575 0.67 0.903232
Target:  5'- cGCgUGCACGAguuaaggguggUGUCCGGCGccgugccguggGCGGAc -3'
miRNA:   3'- -UGgGCGUGCUa----------ACAGGCUGU-----------UGCCUc -5'
7014 3' -54.4 NC_001875.2 + 76869 0.67 0.900667
Target:  5'- cGCCCaGCGCGAgcgacgcGUCCGGCAAacgcgcgcgcaaaGGGGc -3'
miRNA:   3'- -UGGG-CGUGCUaa-----CAGGCUGUUg------------CCUC- -5'
7014 3' -54.4 NC_001875.2 + 121931 0.68 0.890025
Target:  5'- gGCCCGCGCGccaGUCgCGAgUAACGuGAGc -3'
miRNA:   3'- -UGGGCGUGCuaaCAG-GCU-GUUGC-CUC- -5'
7014 3' -54.4 NC_001875.2 + 86262 0.68 0.883071
Target:  5'- gGCCCGCugGAcUUGg-CGGCGAUacaGGAGc -3'
miRNA:   3'- -UGGGCGugCU-AACagGCUGUUG---CCUC- -5'
7014 3' -54.4 NC_001875.2 + 2058 0.68 0.860859
Target:  5'- aACCCGCagACGGUgcUCCGGCAACcGAc -3'
miRNA:   3'- -UGGGCG--UGCUAacAGGCUGUUGcCUc -5'
7014 3' -54.4 NC_001875.2 + 19951 0.68 0.853024
Target:  5'- gGCCgGCGCGAcgGUCCGGcCGGCGc-- -3'
miRNA:   3'- -UGGgCGUGCUaaCAGGCU-GUUGCcuc -5'
7014 3' -54.4 NC_001875.2 + 98631 0.68 0.853024
Target:  5'- aGCCCGCGCccgcguUUG-CCGGCAGC-GAGg -3'
miRNA:   3'- -UGGGCGUGcu----AACaGGCUGUUGcCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.