miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 119052 0.74 0.475341
Target:  5'- gGUCCGGCGuGCGCAugugcGCGGCGCcccGGCu -3'
miRNA:   3'- -UAGGUUGUuCGCGUu----UGCCGCG---UCGu -5'
7015 5' -54.1 NC_001875.2 + 21651 0.74 0.49522
Target:  5'- -gCCAaacGCcAGCGCGGACGaGCGCAGUg -3'
miRNA:   3'- uaGGU---UGuUCGCGUUUGC-CGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 24333 0.74 0.515467
Target:  5'- -gCCAACAAGCGUgccGCGGCGUucAGCu -3'
miRNA:   3'- uaGGUUGUUCGCGuu-UGCCGCG--UCGu -5'
7015 5' -54.1 NC_001875.2 + 47619 0.73 0.546436
Target:  5'- uUCCugGACGAGCGCGcGCGGCccuacuaccgGCAGCu -3'
miRNA:   3'- uAGG--UUGUUCGCGUuUGCCG----------CGUCGu -5'
7015 5' -54.1 NC_001875.2 + 880 0.73 0.546436
Target:  5'- -aCCAcuuUggGCGCGAgaACGGCGCAGUc -3'
miRNA:   3'- uaGGUu--GuuCGCGUU--UGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 124709 0.73 0.56741
Target:  5'- -gCCAACGcGCcugGCAAGCGGCGCguGGCGg -3'
miRNA:   3'- uaGGUUGUuCG---CGUUUGCCGCG--UCGU- -5'
7015 5' -54.1 NC_001875.2 + 85240 0.73 0.56741
Target:  5'- -gUCGACGAGCGCGGGuuccgcgcuCGGCGCGGaCAc -3'
miRNA:   3'- uaGGUUGUUCGCGUUU---------GCCGCGUC-GU- -5'
7015 5' -54.1 NC_001875.2 + 44448 0.73 0.577974
Target:  5'- -aUCAGCAAGgCGCcguCGGCGCAGUg -3'
miRNA:   3'- uaGGUUGUUC-GCGuuuGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 45591 0.73 0.577974
Target:  5'- aGUCCAGCGGGCcCGAcucCGGCGCgcAGCAc -3'
miRNA:   3'- -UAGGUUGUUCGcGUUu--GCCGCG--UCGU- -5'
7015 5' -54.1 NC_001875.2 + 131337 0.73 0.577974
Target:  5'- aGUCCAugGAGCGCcaaAAACaGGCGCA-CAa -3'
miRNA:   3'- -UAGGUugUUCGCG---UUUG-CCGCGUcGU- -5'
7015 5' -54.1 NC_001875.2 + 70186 0.73 0.577974
Target:  5'- --gCAGCGAGC-CGGGCGGCGaCGGCGa -3'
miRNA:   3'- uagGUUGUUCGcGUUUGCCGC-GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 47477 0.72 0.588581
Target:  5'- -cCCGGCAGgccGCGCAccuacCGGCGCAGCc -3'
miRNA:   3'- uaGGUUGUU---CGCGUuu---GCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 14568 0.72 0.599223
Target:  5'- -aUCGugAAGCGCAu-CGGCcGCGGCAg -3'
miRNA:   3'- uaGGUugUUCGCGUuuGCCG-CGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 38677 0.72 0.609891
Target:  5'- uGUCCAuCAAGUGC-GGCGGCGUggGGCu -3'
miRNA:   3'- -UAGGUuGUUCGCGuUUGCCGCG--UCGu -5'
7015 5' -54.1 NC_001875.2 + 100691 0.72 0.609891
Target:  5'- uGUCCGACuccGCGC--GCGGCGCguuaAGCAu -3'
miRNA:   3'- -UAGGUUGuu-CGCGuuUGCCGCG----UCGU- -5'
7015 5' -54.1 NC_001875.2 + 37200 0.72 0.619508
Target:  5'- uGUUCGAgGaaagccuGGCGC-AGCGGUGCAGCAa -3'
miRNA:   3'- -UAGGUUgU-------UCGCGuUUGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 131501 0.72 0.631273
Target:  5'- -aUCGACAgucugcGGCGC--GCGGUGCAGCGg -3'
miRNA:   3'- uaGGUUGU------UCGCGuuUGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 113341 0.72 0.631273
Target:  5'- cGUgCGGCGggucgGGCGCGGcugcgucgcuGCGGCGCGGCGc -3'
miRNA:   3'- -UAgGUUGU-----UCGCGUU----------UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 49609 0.71 0.638761
Target:  5'- -aCCAGC--GCGCAAGCGGCuuccuggacuuccaGCGGCGa -3'
miRNA:   3'- uaGGUUGuuCGCGUUUGCCG--------------CGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 89974 0.71 0.6409
Target:  5'- uGUUgGACGAGCaguuguuGCAGcucgccgccGCGGCGCGGCAa -3'
miRNA:   3'- -UAGgUUGUUCG-------CGUU---------UGCCGCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.