miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 120799 1.07 0.003969
Target:  5'- uAUCCAACAAGCGCAAACGGCGCAGCAg -3'
miRNA:   3'- -UAGGUUGUUCGCGUUUGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 21688 0.82 0.182545
Target:  5'- -cCCGACGAGCGCGAcGCGGUGCuGCGg -3'
miRNA:   3'- uaGGUUGUUCGCGUU-UGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 10431 0.82 0.187393
Target:  5'- -cCCAACAuuuGGCGCAGcagcuuugacGCGGCGCGGCGg -3'
miRNA:   3'- uaGGUUGU---UCGCGUU----------UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 77713 0.79 0.257402
Target:  5'- cGUCCGcuugcacgcuaguguACAcGCGCAAuucgGCGGCGCAGCAg -3'
miRNA:   3'- -UAGGU---------------UGUuCGCGUU----UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 32807 0.78 0.302718
Target:  5'- -gCCGGCAAGCucgGCGAACGGCGCcGCu -3'
miRNA:   3'- uaGGUUGUUCG---CGUUUGCCGCGuCGu -5'
7015 5' -54.1 NC_001875.2 + 88020 0.78 0.310097
Target:  5'- -gCCAACGcccGCGCAAACGcccGCGCAGCAg -3'
miRNA:   3'- uaGGUUGUu--CGCGUUUGC---CGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 40204 0.77 0.349034
Target:  5'- -gCCAGCugcuGCGCGGcuauuCGGCGCAGCAa -3'
miRNA:   3'- uaGGUUGuu--CGCGUUu----GCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 2808 0.77 0.357228
Target:  5'- gGUCUGGCGAGCGCGAgcGCGGCGacguuGGCGa -3'
miRNA:   3'- -UAGGUUGUUCGCGUU--UGCCGCg----UCGU- -5'
7015 5' -54.1 NC_001875.2 + 21977 0.77 0.357228
Target:  5'- -gCCAGCGccAGCuugGCAAACGcGCGCAGCAa -3'
miRNA:   3'- uaGGUUGU--UCG---CGUUUGC-CGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 21257 0.77 0.357228
Target:  5'- gGUCCAGgc-GCGCGcGCGGCGCGGCu -3'
miRNA:   3'- -UAGGUUguuCGCGUuUGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 13788 0.77 0.365555
Target:  5'- uGUCgGACAAucGUGCGggUGGCGCGGCGu -3'
miRNA:   3'- -UAGgUUGUU--CGCGUuuGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 70755 0.76 0.374016
Target:  5'- cAUCaacauGCAAGaCGCGGGCGGCGCAGUu -3'
miRNA:   3'- -UAGgu---UGUUC-GCGUUUGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 54590 0.76 0.391332
Target:  5'- -cCCGGCGGcGCGCccACGGCGCGGUAu -3'
miRNA:   3'- uaGGUUGUU-CGCGuuUGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 76887 0.76 0.400183
Target:  5'- cGUCCGGCAAacgcgcGCGCAAagggGCGGCGCccAGCGa -3'
miRNA:   3'- -UAGGUUGUU------CGCGUU----UGCCGCG--UCGU- -5'
7015 5' -54.1 NC_001875.2 + 121436 0.76 0.409162
Target:  5'- aGUgCAGCGGGUGCcgcgccACGGCGCGGCGg -3'
miRNA:   3'- -UAgGUUGUUCGCGuu----UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 10098 0.75 0.418265
Target:  5'- gGUCUAcagcuACAAGUGCAAAaacgucUGGCGCGGCAa -3'
miRNA:   3'- -UAGGU-----UGUUCGCGUUU------GCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 88217 0.75 0.426561
Target:  5'- cGUCCGucauuggGCAaaaacGGCGCAAGCGGCGCGcGCc -3'
miRNA:   3'- -UAGGU-------UGU-----UCGCGUUUGCCGCGU-CGu -5'
7015 5' -54.1 NC_001875.2 + 41584 0.75 0.436834
Target:  5'- uGUCCAACAaagacgccgaaGGCGCGGGCgcgGGCGCGGgCAu -3'
miRNA:   3'- -UAGGUUGU-----------UCGCGUUUG---CCGCGUC-GU- -5'
7015 5' -54.1 NC_001875.2 + 100145 0.75 0.446294
Target:  5'- -gCCGGCGGcGCGCAAGCGGCGguccacgcCGGCAc -3'
miRNA:   3'- uaGGUUGUU-CGCGUUUGCCGC--------GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 59124 0.75 0.455868
Target:  5'- -gCCGacgcGCAAGCGCAauuAACGGCGC-GCAc -3'
miRNA:   3'- uaGGU----UGUUCGCGU---UUGCCGCGuCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.