miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 69157 0.66 0.894835
Target:  5'- -cUCAACGAuCGCGA--GGCGCAGCu -3'
miRNA:   3'- uaGGUUGUUcGCGUUugCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 72632 0.66 0.908103
Target:  5'- cUgCGGCAcGC-CAAACGGCGCGGg- -3'
miRNA:   3'- uAgGUUGUuCGcGUUUGCCGCGUCgu -5'
7015 5' -54.1 NC_001875.2 + 18193 0.66 0.914353
Target:  5'- -gCCGGCGGGCGUA---GGCGUGGUg -3'
miRNA:   3'- uaGGUUGUUCGCGUuugCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 125341 0.66 0.920344
Target:  5'- --gCGGCcAGCGUgu-UGGCGCGGCAc -3'
miRNA:   3'- uagGUUGuUCGCGuuuGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 9766 0.66 0.90423
Target:  5'- uUCCGAggcCAAGCGCAcGCGGCacauccgggcacugcGCGuGCAc -3'
miRNA:   3'- uAGGUU---GUUCGCGUuUGCCG---------------CGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 42532 0.66 0.894835
Target:  5'- -gCCGA--AGCGCAugguGGCGGCGCcauGCGg -3'
miRNA:   3'- uaGGUUguUCGCGU----UUGCCGCGu--CGU- -5'
7015 5' -54.1 NC_001875.2 + 82711 0.66 0.908103
Target:  5'- -gCCGcCAGucGCGCAGgggcACGGgGCAGCGc -3'
miRNA:   3'- uaGGUuGUU--CGCGUU----UGCCgCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 108725 0.66 0.894835
Target:  5'- cGUUCAuCAuGCGCAGcggccuuugGCGGgGCAGCu -3'
miRNA:   3'- -UAGGUuGUuCGCGUU---------UGCCgCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 113627 0.66 0.914353
Target:  5'- --gCGGCAAGaGCGgcGACGGCGCcGCGu -3'
miRNA:   3'- uagGUUGUUCgCGU--UUGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 84364 0.66 0.914353
Target:  5'- -gCCggUAGGUGCGcggccugccggGGCGGCGuCGGUAg -3'
miRNA:   3'- uaGGuuGUUCGCGU-----------UUGCCGC-GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 76448 0.66 0.901596
Target:  5'- cUUCAGCAuGaCGUAcaacGACGGCGcCGGCAa -3'
miRNA:   3'- uAGGUUGUuC-GCGU----UUGCCGC-GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 39669 0.66 0.920344
Target:  5'- -gCCGGC-GGCGCGcGGCGGCG-AGCu -3'
miRNA:   3'- uaGGUUGuUCGCGU-UUGCCGCgUCGu -5'
7015 5' -54.1 NC_001875.2 + 117925 0.66 0.914353
Target:  5'- --aCGGCAAGCuGCAGGcCGGCGUGcGCGc -3'
miRNA:   3'- uagGUUGUUCG-CGUUU-GCCGCGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 34401 0.66 0.914353
Target:  5'- uUCCucauGCAAGUGgAaaacGACGGCGCGuugcGCAa -3'
miRNA:   3'- uAGGu---UGUUCGCgU----UUGCCGCGU----CGU- -5'
7015 5' -54.1 NC_001875.2 + 54134 0.66 0.901596
Target:  5'- -aCUAGC--GUGCAAGCGGacgGCGGCAg -3'
miRNA:   3'- uaGGUUGuuCGCGUUUGCCg--CGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 57548 0.66 0.894835
Target:  5'- -gCCGuagGCGAugcgcuguucgcGCGUAAAcCGGCGCGGCGu -3'
miRNA:   3'- uaGGU---UGUU------------CGCGUUU-GCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 53922 0.66 0.901596
Target:  5'- -gCCGuuGCGGGCGCGu-UGGCGC-GCAc -3'
miRNA:   3'- uaGGU--UGUUCGCGUuuGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 98893 0.66 0.908103
Target:  5'- --gCGACAuG-GCGAGCGGCGC-GCAa -3'
miRNA:   3'- uagGUUGUuCgCGUUUGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 41705 0.66 0.914353
Target:  5'- -gCCAG--GGCGUAugcGCGGCGCuGCGc -3'
miRNA:   3'- uaGGUUguUCGCGUu--UGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 34811 0.66 0.894835
Target:  5'- -gCCGGCAAGCGUuuACGaCGCuGCc -3'
miRNA:   3'- uaGGUUGUUCGCGuuUGCcGCGuCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.