miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 37200 0.72 0.619508
Target:  5'- uGUUCGAgGaaagccuGGCGC-AGCGGUGCAGCAa -3'
miRNA:   3'- -UAGGUUgU-------UCGCGuUUGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 880 0.73 0.546436
Target:  5'- -aCCAcuuUggGCGCGAgaACGGCGCAGUc -3'
miRNA:   3'- uaGGUu--GuuCGCGUU--UGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 85240 0.73 0.56741
Target:  5'- -gUCGACGAGCGCGGGuuccgcgcuCGGCGCGGaCAc -3'
miRNA:   3'- uaGGUUGUUCGCGUUU---------GCCGCGUC-GU- -5'
7015 5' -54.1 NC_001875.2 + 70186 0.73 0.577974
Target:  5'- --gCAGCGAGC-CGGGCGGCGaCGGCGa -3'
miRNA:   3'- uagGUUGUUCGcGUUUGCCGC-GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 44448 0.73 0.577974
Target:  5'- -aUCAGCAAGgCGCcguCGGCGCAGUg -3'
miRNA:   3'- uaGGUUGUUC-GCGuuuGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 45591 0.73 0.577974
Target:  5'- aGUCCAGCGGGCcCGAcucCGGCGCgcAGCAc -3'
miRNA:   3'- -UAGGUUGUUCGcGUUu--GCCGCG--UCGU- -5'
7015 5' -54.1 NC_001875.2 + 131337 0.73 0.577974
Target:  5'- aGUCCAugGAGCGCcaaAAACaGGCGCA-CAa -3'
miRNA:   3'- -UAGGUugUUCGCG---UUUG-CCGCGUcGU- -5'
7015 5' -54.1 NC_001875.2 + 38677 0.72 0.609891
Target:  5'- uGUCCAuCAAGUGC-GGCGGCGUggGGCu -3'
miRNA:   3'- -UAGGUuGUUCGCGuUUGCCGCG--UCGu -5'
7015 5' -54.1 NC_001875.2 + 100691 0.72 0.609891
Target:  5'- uGUCCGACuccGCGC--GCGGCGCguuaAGCAu -3'
miRNA:   3'- -UAGGUUGuu-CGCGuuUGCCGCG----UCGU- -5'
7015 5' -54.1 NC_001875.2 + 47619 0.73 0.546436
Target:  5'- uUCCugGACGAGCGCGcGCGGCccuacuaccgGCAGCu -3'
miRNA:   3'- uAGG--UUGUUCGCGUuUGCCG----------CGUCGu -5'
7015 5' -54.1 NC_001875.2 + 119052 0.74 0.475341
Target:  5'- gGUCCGGCGuGCGCAugugcGCGGCGCcccGGCu -3'
miRNA:   3'- -UAGGUUGUuCGCGUu----UGCCGCG---UCGu -5'
7015 5' -54.1 NC_001875.2 + 59124 0.75 0.455868
Target:  5'- -gCCGacgcGCAAGCGCAauuAACGGCGC-GCAc -3'
miRNA:   3'- uaGGU----UGUUCGCGU---UUGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 10431 0.82 0.187393
Target:  5'- -cCCAACAuuuGGCGCAGcagcuuugacGCGGCGCGGCGg -3'
miRNA:   3'- uaGGUUGU---UCGCGUU----------UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 77713 0.79 0.257402
Target:  5'- cGUCCGcuugcacgcuaguguACAcGCGCAAuucgGCGGCGCAGCAg -3'
miRNA:   3'- -UAGGU---------------UGUuCGCGUU----UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 32807 0.78 0.302718
Target:  5'- -gCCGGCAAGCucgGCGAACGGCGCcGCu -3'
miRNA:   3'- uaGGUUGUUCG---CGUUUGCCGCGuCGu -5'
7015 5' -54.1 NC_001875.2 + 88020 0.78 0.310097
Target:  5'- -gCCAACGcccGCGCAAACGcccGCGCAGCAg -3'
miRNA:   3'- uaGGUUGUu--CGCGUUUGC---CGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 40204 0.77 0.349034
Target:  5'- -gCCAGCugcuGCGCGGcuauuCGGCGCAGCAa -3'
miRNA:   3'- uaGGUUGuu--CGCGUUu----GCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 21257 0.77 0.357228
Target:  5'- gGUCCAGgc-GCGCGcGCGGCGCGGCu -3'
miRNA:   3'- -UAGGUUguuCGCGUuUGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 54590 0.76 0.391332
Target:  5'- -cCCGGCGGcGCGCccACGGCGCGGUAu -3'
miRNA:   3'- uaGGUUGUU-CGCGuuUGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 88217 0.75 0.426561
Target:  5'- cGUCCGucauuggGCAaaaacGGCGCAAGCGGCGCGcGCc -3'
miRNA:   3'- -UAGGU-------UGU-----UCGCGUUUGCCGCGU-CGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.