miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 880 0.73 0.546436
Target:  5'- -aCCAcuuUggGCGCGAgaACGGCGCAGUc -3'
miRNA:   3'- uaGGUu--GuuCGCGUU--UGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 1518 0.67 0.873064
Target:  5'- -gCCuuuuggguGCGGGCGCucucGAACGGCGCGuGCu -3'
miRNA:   3'- uaGGu-------UGUUCGCG----UUUGCCGCGU-CGu -5'
7015 5' -54.1 NC_001875.2 + 2055 0.69 0.756909
Target:  5'- -cCCAACc--CGCAGACGGUGCuccGGCAa -3'
miRNA:   3'- uaGGUUGuucGCGUUUGCCGCG---UCGU- -5'
7015 5' -54.1 NC_001875.2 + 2655 0.68 0.832162
Target:  5'- cGUCUAcuuGC-GGCGCcGGCGGCGCcuggGGCAa -3'
miRNA:   3'- -UAGGU---UGuUCGCGuUUGCCGCG----UCGU- -5'
7015 5' -54.1 NC_001875.2 + 2808 0.77 0.357228
Target:  5'- gGUCUGGCGAGCGCGAgcGCGGCGacguuGGCGa -3'
miRNA:   3'- -UAGGUUGUUCGCGUU--UGCCGCg----UCGU- -5'
7015 5' -54.1 NC_001875.2 + 3104 0.67 0.865328
Target:  5'- -gCCG--GGGCGCGGcucGCGGCGCAGa- -3'
miRNA:   3'- uaGGUugUUCGCGUU---UGCCGCGUCgu -5'
7015 5' -54.1 NC_001875.2 + 3820 0.69 0.766844
Target:  5'- -aCCGGCcgucgucGGCGCAcgcCGGCGCGGCc -3'
miRNA:   3'- uaGGUUGu------UCGCGUuu-GCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 5405 0.69 0.786313
Target:  5'- -gUCAACGAGCuGCucgaGGUGCAGCGc -3'
miRNA:   3'- uaGGUUGUUCG-CGuuugCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 5437 0.67 0.865328
Target:  5'- -cCCGACAAcGUGCAagaugGACGuguGCGCAGCc -3'
miRNA:   3'- uaGGUUGUU-CGCGU-----UUGC---CGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 5917 0.68 0.814355
Target:  5'- -gCCGGCAuggcguuggguAGCGCcgcgcaGGugGGCGCGGCc -3'
miRNA:   3'- uaGGUUGU-----------UCGCG------UUugCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 6705 0.67 0.857363
Target:  5'- uGUCCAACAaccaguuugugAGCGCGGgcgacauaaaccGCaucacGCGCAGCAa -3'
miRNA:   3'- -UAGGUUGU-----------UCGCGUU------------UGc----CGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 9766 0.66 0.90423
Target:  5'- uUCCGAggcCAAGCGCAcGCGGCacauccgggcacugcGCGuGCAc -3'
miRNA:   3'- uAGGUU---GUUCGCGUuUGCCG---------------CGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 10098 0.75 0.418265
Target:  5'- gGUCUAcagcuACAAGUGCAAAaacgucUGGCGCGGCAa -3'
miRNA:   3'- -UAGGU-----UGUUCGCGUUU------GCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 10431 0.82 0.187393
Target:  5'- -cCCAACAuuuGGCGCAGcagcuuugacGCGGCGCGGCGg -3'
miRNA:   3'- uaGGUUGU---UCGCGUU----------UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 11588 0.68 0.83129
Target:  5'- -cCCAaagcuacuuauuuACAAGCGUu-GCGGCGUGGCc -3'
miRNA:   3'- uaGGU-------------UGUUCGCGuuUGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 11944 0.7 0.716066
Target:  5'- -gCCGACuguGCGCGcgaccGGCGGCGCGuuGCAa -3'
miRNA:   3'- uaGGUUGuu-CGCGU-----UUGCCGCGU--CGU- -5'
7015 5' -54.1 NC_001875.2 + 12171 0.66 0.908103
Target:  5'- -aCCGACAGGaUGCugAGAauGCGCAGCu -3'
miRNA:   3'- uaGGUUGUUC-GCG--UUUgcCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 12811 0.67 0.873064
Target:  5'- aGUCUGuAUggGgGUAGAUGGCGCGGUu -3'
miRNA:   3'- -UAGGU-UGuuCgCGUUUGCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 13327 0.68 0.823353
Target:  5'- uUCCAcuuGCA-GCGCAAAC--CGCAGCAg -3'
miRNA:   3'- uAGGU---UGUuCGCGUUUGccGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 13788 0.77 0.365555
Target:  5'- uGUCgGACAAucGUGCGggUGGCGCGGCGu -3'
miRNA:   3'- -UAGgUUGUU--CGCGUuuGCCGCGUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.