miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 3' -56.9 NC_001875.2 + 98256 0.66 0.836522
Target:  5'- cAACCGC-CAcGUCGCCGacucgGGCaUGGUg -3'
miRNA:   3'- uUUGGCGuGU-CAGCGGCa----CUG-ACCGu -5'
7019 3' -56.9 NC_001875.2 + 120504 0.66 0.836522
Target:  5'- cAACCGCGCAGacacUCGCCaaaucGUGGC-GGUc -3'
miRNA:   3'- uUUGGCGUGUC----AGCGG-----CACUGaCCGu -5'
7019 3' -56.9 NC_001875.2 + 49929 0.66 0.835683
Target:  5'- gGAGCCGCGCgcgcuaaucagcuGGUCGUCGgaGCUGcGCGc -3'
miRNA:   3'- -UUUGGCGUG-------------UCAGCGGCacUGAC-CGU- -5'
7019 3' -56.9 NC_001875.2 + 117762 0.66 0.828051
Target:  5'- uGGGCUGCACGguaaacccGUCGCCGU---UGGCGa -3'
miRNA:   3'- -UUUGGCGUGU--------CAGCGGCAcugACCGU- -5'
7019 3' -56.9 NC_001875.2 + 70040 0.66 0.828051
Target:  5'- uGAUUGUGCGGUCGCUGcGACggacgGGCc -3'
miRNA:   3'- uUUGGCGUGUCAGCGGCaCUGa----CCGu -5'
7019 3' -56.9 NC_001875.2 + 29276 0.66 0.828051
Target:  5'- cGACCGCgccgGCGGggCGCgGUcGugUGGCGu -3'
miRNA:   3'- uUUGGCG----UGUCa-GCGgCA-CugACCGU- -5'
7019 3' -56.9 NC_001875.2 + 74091 0.66 0.819396
Target:  5'- aAAACC-UGCAGUugggcagcgaCGCCGUG-CUGGCGc -3'
miRNA:   3'- -UUUGGcGUGUCA----------GCGGCACuGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 10396 0.66 0.819396
Target:  5'- -cGCCGC-Cg--CGCCGUGGCgcGGCAc -3'
miRNA:   3'- uuUGGCGuGucaGCGGCACUGa-CCGU- -5'
7019 3' -56.9 NC_001875.2 + 90131 0.66 0.799748
Target:  5'- -cGCCGCGCAG-CGCCGcgcauacgccCUGGCc -3'
miRNA:   3'- uuUGGCGUGUCaGCGGCacu-------GACCGu -5'
7019 3' -56.9 NC_001875.2 + 122675 0.66 0.79241
Target:  5'- aAGACCGCAgCAaaaaguuggcGUgCGCCGUGgacaccgaACUGGCGc -3'
miRNA:   3'- -UUUGGCGU-GU----------CA-GCGGCAC--------UGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 33396 0.67 0.783104
Target:  5'- -cAUUGCGCGGUagCGCuCGUGGCUGaGCu -3'
miRNA:   3'- uuUGGCGUGUCA--GCG-GCACUGAC-CGu -5'
7019 3' -56.9 NC_001875.2 + 69260 0.67 0.783104
Target:  5'- uGGGCCGCgGCucgaGCCGUGGCggcGGCAa -3'
miRNA:   3'- -UUUGGCG-UGucagCGGCACUGa--CCGU- -5'
7019 3' -56.9 NC_001875.2 + 110813 0.67 0.781226
Target:  5'- -cGCCGCGCAGguggacgcgcuggugCGCCGcgGACUguauuugucguacgGGCAg -3'
miRNA:   3'- uuUGGCGUGUCa--------------GCGGCa-CUGA--------------CCGU- -5'
7019 3' -56.9 NC_001875.2 + 50015 0.67 0.773658
Target:  5'- uGGGgCGCGCguGGUCGCCG-GGC-GGCGa -3'
miRNA:   3'- -UUUgGCGUG--UCAGCGGCaCUGaCCGU- -5'
7019 3' -56.9 NC_001875.2 + 10269 0.67 0.764081
Target:  5'- uAACCGCACAuuuGaCGCCGUGG-UGGUc -3'
miRNA:   3'- uUUGGCGUGU---CaGCGGCACUgACCGu -5'
7019 3' -56.9 NC_001875.2 + 120421 0.67 0.754383
Target:  5'- gGAAgUGCGCAGUCGCac-GGCggGGCAa -3'
miRNA:   3'- -UUUgGCGUGUCAGCGgcaCUGa-CCGU- -5'
7019 3' -56.9 NC_001875.2 + 119750 0.68 0.714572
Target:  5'- -uACCGCcaaAGUCGCCGccggugcgucUGACgGGCGa -3'
miRNA:   3'- uuUGGCGug-UCAGCGGC----------ACUGaCCGU- -5'
7019 3' -56.9 NC_001875.2 + 36153 0.68 0.708485
Target:  5'- cGAGCCGUAgauugcgcauuaaacCGGUUGCCGUGugUGaCAa -3'
miRNA:   3'- -UUUGGCGU---------------GUCAGCGGCACugACcGU- -5'
7019 3' -56.9 NC_001875.2 + 130778 0.68 0.704413
Target:  5'- uGACCGCGCGGUCGCCaacguUGcgcccaacGCUGuGCGc -3'
miRNA:   3'- uUUGGCGUGUCAGCGGc----AC--------UGAC-CGU- -5'
7019 3' -56.9 NC_001875.2 + 17164 0.68 0.683916
Target:  5'- cGAAaaGCACGGUCGCCGcUGAC--GCAc -3'
miRNA:   3'- -UUUggCGUGUCAGCGGC-ACUGacCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.